Xylella fastidiosa 9a5c: XF_0422
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Entry
XF_0422 CDS
T00033
Name
(GenBank) exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XF_0422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfa03400
]
XF_0422
Enzymes [BR:
xfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XF_0422
DNA repair and recombination proteins [BR:
xfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XF_0422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AAF83232
UniProt:
Q9PG80
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All DBs
Position
429245..432610
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AA seq
1121 aa
AA seq
DB search
MSQMMVTTDFRLYHSNALDVLAGLLAETLRSPVPGQSLLVPDIILIPQAAMRRWLQATLA
TTHGVVANLEFLTPGEFVARALDANLGAVPNALDTAVLHWRLYAALCDPALLTQPALAEL
HAYLADGDLFKPWTLAEALSAAFEKYQAWRCDWLLRWEAGADPDDPQAILWRHSVNGATH
RARRIHDYLNRYGSGTEHPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFYLPTPT
KEYWGDAQPFTQRLHQPTDCVTQTGENRLLHAWGAAGRDFMTVLGSYEVVHPSGEITAYD
DPEQRLGTTLDEGGLRDSLLQRMHADLFHNRSAPVPAPLPAPRLEDPSLQFHACHTRLRE
LQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHSDPLPY
TLADASPLIDEPLAEVFLRLLDLPLSRFGLHEILDLLAILPMATLAGFDTQTLESLRSWL
TAAGARWGLDAAHRAEHQAPADDAYTWSFALDRLLLGHASGADADIAGVAAWPDLEGSML
TALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTAPSGIQRPLERLRR
LIDTFATDATRAGVALPVPAEVVRMHFAALLGDTDTRAPLLTGGISIGRMVPMRLLPFRV
ICLLGMNDGDFPRRDPAAGLNRLTAELGTAQRRPGDRSRRDDDCLLFLQLFSAAQDVFYV
SYLGADPHDGSLREPSPLLTELLSTAVTYHADPSTAAKTLLLRHSLQPFSPTAFGADGDP
RRFSYHPLWHAAAASIEGQRHPLDPWCPRRLPALPDPEPALPLHSLRRFFSAPAEQFLQQ
RLGLRLPEPPQTTDECDPLWLPSHGLERHRLDTLIFASLLHEADDTLYPQLRARALLPSG
PLGRQQLHERIEHLRPYAQAFAHWRGTAPPQSQYLEVMIDGIRLHAHIQDLYPHGIARLR
LGPPNGPAVLRHGLDWLLASAAGHPWPLVRFEDAGVAGLGPHLQPSLPSSQAQTALSLLL
RLRTAGLRQPLPFAPYSAWEYYTQRDTPERALQTARARWRGNDHQWGESNHAAIQLALRN
HDPFATPQTAAHFAQLATLIFDLLTTGQADPEPLTWLQLHP
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagatgatggtcaccactgactttcgcctataccactccaatgcactcgacgtt
ctggcgggattgctggccgaaacgttgcggtccccggtgccgggccagtcgttgttggtc
ccagacataatattgattccacaagcggccatgcggcgttggttgcaagccacgttggcc
accacgcatggtgtcgtggccaatctggaatttttgactccgggcgagttcgttgcccgt
gcattggatgccaatcttggtgccgtgccgaacgctttggatacggccgtgttgcattgg
cgactatatgcagcgttgtgcgatccagcattactgacgcaaccagcgcttgctgaatta
catgcttacctggcggatggcgacctcttcaaaccttggacattggccgaagcactgagt
gcggcattcgaaaaataccaggcttggcgttgcgactggttgctacgctgggaggcgggc
gcagatccggacgatccacaggccatcctatggcggcatagtgtcaacggtgccacgcac
cgcgcacgccgcatccacgactacctgaaccgttatgggtcagggacagaacaccccccc
caaggactgccagcgcgactctttattttcgccaccctcaacatctccccagatgtatta
cgtgtcctggcgacccaggcacaggttggcacactgcacttttacctgccgaccccgacc
aaagaatattggggtgatgcgcaacccttcacgcaacgcttgcatcagcccaccgactgc
gtcacccagaccggagaaaaccgcctactccatgcctggggtgctgccgggcgtgatttc
atgactgtgttggggagctacgaagtcgtccatccctccggcgaaatcaccgcatacgat
gatccggaacaacgtctaggcaccaccctggatgaaggcggcctgcgcgatagcctattg
cagcgcatgcatgcggatctattccataaccgttcggcacccgtccccgcccccttgccc
gcaccacgtctggaagatcccagtctccagtttcacgcctgtcatacccgactgcgtgaa
ctccaggtccttcatgaccggctccgtgccttgctggaacctaactcaccggagggccag
cgttttaaccctcccttacaaccgcgtgagattgccgtattggcaccggacatcgacctc
tacatcccctatctagaagccgtgttcggtggacacgcccatagcgaccccttgccatac
acactggctgatgccagcccactgattgatgaaccgctggctgaagtcttcttgcgtctc
ctcgacttgcccctatcccgctttggcctgcacgaaatattggacctcctggccatcctg
ccgatggccacccttgctggctttgacacacagaccttagagagcctacggagctggctg
accgccgccggcgcacgctggggattggatgctgcccaccgtgccgaacaccaagccccg
gctgacgacgcctacacctggagctttgcactggaccgcctcctcctgggtcacgccagc
ggcgcagatgccgatattgctggcgtcgctgcttggccggatctggaaggcagcatgctg
accgcattggacaccctgatccgattactgcgcgtcctcgccaatacccgacaacgcctg
agtgaggccctattaccgacacagtggcgagaacgcttactgagcctgcttgatgcactc
ctgcctgacatccccaccgcaccatccggtatccagcgtcccttagaacgcttacgcaga
ctgatcgacaccttcgccaccgatgccacacgcgccggagtggccttacccgtgccagcc
gaagtcgtgcgtatgcactttgccgctttactgggcgacactgatacccgcgccccactg
ctcacaggtggcatcagtattggccgcatggttcccatgcgactgctccccttccgcgtc
atttgtttattaggcatgaacgacggcgacttcccgcgccgcgatcctgcggctggcctc
aatcgcctcaccgccgaacttggcaccgcacagcgtcgccctggtgatcgctcccgacgt
gatgacgactgcctcctatttctacagctattcagcgccgcccaagacgtcttctacgtc
agctaccttggcgctgatcctcacgacggcagcctacgcgaaccctcaccgctgctcaca
gaactacttagcaccgcagtcacctaccatgccgaccccagtacagccgccaaaacactg
ctattgcggcattcattacagccattctcccccactgcctttggcgccgacggcgaccca
cgccgattcagctaccaccccttatggcatgccgccgccgcgagtattgaaggacagcgc
caccctctggacccctggtgtccccgccgactcccagcgcttcccgaccccgaacccgcc
ctgccactgcacagcctgcggcgcttctttagcgcccctgcagaacagtttctacaacag
cgcctgggcctacgcctgcccgaaccccctcagaccaccgatgaatgcgaccccctctgg
cttcccagccacggcctggaacgccatcgactcgacaccctgatatttgcctccctactc
catgaggctgacgacaccctctacccacaactacgcgcccgtgcattactcccctcaggt
cccttaggccgacagcaactccacgaacgcattgaacacctgcgcccctatgcccaagca
tttgcacactggcgcggtaccgcccccccgcagtcccagtaccttgaagtgatgatcgac
ggcattcgtctccacgcacacattcaggacctctacccccacggaatcgcccgcctgcgc
ctgggtccccctaacggccccgcggtactgcgccacggattagattggctgctggccagc
gccgccggccacccctggcccctggtccgctttgaagatgcaggcgttgcgggcctaggt
ccccatctacagccatccttgcccagttcccaagcacagaccgcactgagcctactcctc
cgcctgcgcacggctggcctgcgccagcccctaccctttgccccctacagcgcctgggag
tactacacccagcgcgacacccccgaacgtgccttgcagaccgcccgcgcccgctggcgt
ggtaacgaccaccaatggggcgaaagcaaccatgcagcgatccaattagcactgcgtaac
cacgatccctttgccaccccgcagaccgctgcccactttgcacagctcgcaacactgata
tttgacctactcaccaccggtcaggccgacccagaacccttgacctggctgcaactgcac
ccatga
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