Xylella fastidiosa 9a5c: XF_1103
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Entry
XF_1103 CDS
T00033
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03030
DNA replication
xfa03410
Base excision repair
xfa03420
Nucleotide excision repair
xfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XF_1103
03410 Base excision repair
XF_1103
03420 Nucleotide excision repair
XF_1103
03440 Homologous recombination
XF_1103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfa03032
]
XF_1103
03400 DNA repair and recombination proteins [BR:
xfa03400
]
XF_1103
Enzymes [BR:
xfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XF_1103
DNA replication proteins [BR:
xfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XF_1103
DNA repair and recombination proteins [BR:
xfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
XF_1103
NER (nucleotide excision repair)
GGR (global genome repair) factors
XF_1103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AAF83913
UniProt:
Q9PEC5
LinkDB
All DBs
Position
1052911..1055682
Genome browser
AA seq
923 aa
AA seq
DB search
MSKLVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKERPDYAAFVIDAPG
KTFRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLALAAV
ADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGD
AVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDNLRVVLPRLLLNRALITI
KTDVVLEKCPQDLALRERDTEALRGFYQRYGFTQALKELDGGSVAVTVAEQEPGRGRNAG
FHVAPDASVAMEINPALSAPGEYETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAV
LIGLSFAAEVGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHV
LRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFS
HVGVQEATRYAAEDADITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQI
DAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQP
STNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATG
RLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAF
ESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDY
IALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAP
MQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMA
AAAQLRVPLVVDVGVGHHWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagttttaattgatgggtccagttacctctatcgtgcgtttcacgcattg
ccgccgctcagtaatgcagcaggtgaacctaccggtgcgctgttcggtgtggtcaacatg
ttgcgtactacattgaaggagcgcccggactatgctgctttcgtgattgatgcaccaggg
aagacgtttcgcgatgctcttgattccgaatacaaaatgcatcgtccgcctatgcctgat
gatttgcgtgtgcaggtggagccgatgtgtgggattgtgcaggcgttaggtatcgatatt
ttgtgtatcgatggggtggaggctgatgatgtgatcggcacattagctttagctgccgtt
gctgatgggattgcggtaacaatttctacgggtgataaggacttcgctcagttggtgcgc
ccaggtgtggagttggtcaacacaatgactggtagtcggatggactcggctatggcagtg
atcaataaattcggggttgctccggatcagattattgattttttggcgttgatgggcgat
gcggtggataacgtgcctggtgtggataaatgcggtccgaagacagcagcgaagtggttg
gctgagtatggttcactggatgcggtgattgccaatgcggacaagatcaaggggaaaatt
ggtgacaatctgcgtgttgtgctgccacggcttttgttaaatcgtgcgctgattacaatc
aagactgatgtggtattggagaagtgcccgcaggatttggcgctgcgtgagcgtgatact
gaagcgctgcgtggtttttaccagcggtatggcttcacacaggcattgaaggaactcgat
ggcggtagcgttgcagtcactgtggctgagcaggagcctgggcgtgggaggaatgcgggt
ttccatgttgctcctgatgcatcggtggcaatggagattaatccggcgttgtctgcgccc
ggagagtacgagacgattttcacagttgagcagttgcaggattggattgtgcggttgcgg
gtggcgggtcagtttgctttggacactgaaaccgacagtctggatccaatgcaagcggtg
ctcattggtctgagttttgcggcagaagtaggatgtgctgcttacttgccgtttggtcat
gattaccctggtgcgccggtgcagcttgatcgcgggcaggcgctggcattactgcaaccg
ctgctggaagatgctgcggtgcgcaaggtgggtcagcatggcaaatatgatatgcatgtg
ctgcgtcgttacggcatcgtgctcgctggttatgccgatgacactctattagaaagtttt
gtacttacctccggtcatgcgcgtcacgatatggatacgttggcgaggcgccacctcggt
tacgagacgatgaagtatgtcgatctggtgggtaagggagctaagcagattcctttttcg
catgtgggggttcaggaggcgactcggtacgctgctgaggatgcggatattacgttgcgc
ttgcactgtgtgctggcgcccaagttgttggcggagccaagtttggagcgggtctaccgt
gaaatcgaaatgccactggttgctgtgctggagcgcattgaggccaatggtgtgcagatt
gatgcagaggagttgtataagcagagtgctgatttgtcgcggcggatggttattgcgcag
caaaaggcgatggatttggcagggcgtcacttcaacttggattcaccgaaacagttacag
gtgctgttgtttgatgagctgaagttgccagtcgtggtgaagacgcccaaggggcagcca
tcgactaatgaggaggcgttggaggcgattgttgatcagcatgcgttaccgcgtgtcatt
ctggaatatcgcagcttggccaagctgcgcaatacctacactgagaagttgccggagatg
attcatccgcacaccgggcgtgtgcataccaattaccatcaggccggtgctgctactggg
cgtttgtcttcctcagatcctaatttgcagaatatcccgattcgtacggatgatggtcgc
cgtatccgtcgtgcttttgtggcgccttctgggcgcaagttgattgcttgcgattattcg
cagatcgagttgaggatcatggcgcatctttccggggatgcggggcttgttgatgcgttt
gagtctggtgtggatgtgcattgtgctatcgctgcggaggtgttcggtcgtggaattgat
gaggtgacgctgaatgagcgtcgtgcggcgaaggcaatcaattttggcttgatctacggg
atgagtgcgtttggcttggcgcgtcagcttggtatcagccgcggtgaggcgcaggattac
attgccttgtatttcgatcgttttgctggggtgcgtgattttatggaaaacacgcgtcag
caggcgcgcgatagagggtatgtagaaacggtgttcgggcgccgtctgtatttgaactcc
attgccagcggtaatcagacgcagcgtgccggtgctgagcgtgcagcgatcaatgcgcca
atgcaggggactgcggccgatatcatcaagcgtgccatggttgcagtggatggttggttg
ggagtgggagggcatcgggagcgggcactgatgatcttgcaagtacacgatgaattagtg
tttgaggcggatgagggtttcgtgccgacgcttgtacatgaagtgtcggcgcgaatggct
gcggcagcgcagttgcgtgtgccgttggttgtcgatgttggcgtaggtcatcactgggat
gaggcgcactga
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