Xylella fastidiosa 9a5c: XF_1110
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Entry
XF_1110 CDS
T00033
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03410
Base excision repair
xfa03430
Mismatch repair
xfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XF_1110
03430 Mismatch repair
XF_1110
03440 Homologous recombination
XF_1110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfa03400
]
XF_1110
DNA repair and recombination proteins [BR:
xfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
XF_1110
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
XF_1110
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XF_1110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AAF83920
UniProt:
Q9PEB8
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All DBs
Position
1063270..1065015
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AA seq
581 aa
AA seq
DB search
MLRRVYTARGCADPVTAQPCLAQLLSPATLSNIQAATVLLTQVIKANGRILVVGDFDCDG
ATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTVDHGIACHA
GVAAAKARGWQVLVTDHHLPGEILPPADVIVNPNLPGDLFPSKTLAGVGVIFYVLLALRA
RLYPVAHAEYEGQETLIHRSISQKNRPDLTSLLDLVAVGTVADLVPLDTNNRALVAAGLR
RLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIELLLTEDWT
RARAIAAMLEEMNAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVCLFDPDWHPGVIGL
VASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLAALDSGYPGMIQKFGGHA
MAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALHARALRLGGP
WGQGFPEPLFDGEFEVLQWRVLKERHLKMEVRHSGRHDALNAIYFNGWQGDPPARRLRLA
YRLVCDDYRGGDAIQLIVEYAEVIECDVSGFQAISSGVLDP
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
ttgctgcgacgcgtgtacacggcacgcggttgtgccgatccggtgacggcgcaaccctgt
ctcgctcagttgttgtcacccgccacgctgagcaacatccaggcagccactgtattgctg
acccaggtcatcaaggccaatgggcgtattctggttgtcggtgattttgactgcgatggt
gcaactgcctgtgcggttgcggtgcgtggtttgcgtttgcttggcgcgcgtaacgtgatg
catgcggtccccaatcgtatggtgcatggttacggtttgtcgtcggcattggttgaggag
ttggcaccgttgcagccagcgttgcttgtcacggtggatcacggcattgcttgtcatgcc
ggcgttgctgctgctaaggctcgcggttggcaggtgttggtgactgatcaccatttgccg
ggtgaaatcttgccgccagccgatgtcattgttaatccgaatttgcctggcgatttgttt
ccgagtaaaacgctggcgggtgtcggggtgatcttttatgtactgctcgcgctgcgtgcg
cgtctttatcctgttgctcatgcggagtacgaaggtcaagaaacgcttattcaccgttct
atttctcagaaaaaccgtcctgatttgacgtctttactggatttagttgcggtcgggacg
gttgccgacttggtgcctttagatacgaataatcgtgctttggttgctgcgggcttgcgc
cggttgcgtcgtggtcaagggtgtctcggactacgcgcgttgatcgaggtcagtggccgt
gatgagtcgcaattgaccgctactgatattggttttgcattgagtccgcgtctgaacgct
gcaggacggctggaggatatggcgttgggcattgaactgttgctcactgaggattggacg
cgcgcgcgtgctatcgcagccatgcttgaggagatgaatgccgcacgccgtgtggtacag
cagggtatgagtgacgatgctgagcaggcagtagcgcaagcgatggcgcagtcaggcggt
gtgttgccaatggcggtgtgcctattcgatccggactggcatccaggggtgattggtttg
gtcgcctccaagatgaaggacaaaatgcaccgtccggtggtggctttagccccggctgag
ccgggaggtacagtgttgcgagggtcggcacggtcgatcccagggctgcatatccgtgat
gtattggcggcgcttgacagtggttatcccgggatgattcagaaatttggaggtcatgcg
atggcggccggcttgacactggatgcggaggtgttgccggtgttcgaacgtgtatttcgt
gctcaagttgagatgatggttgataagaatgtgttgcaggctgagttgtatagcgatggt
gaattggcggccgatgagctggacgcattacatgcgcgggcattgcggctgggtgggcca
tggggacaggggtttccagagccattgtttgatggagagtttgaagtgctgcaatggcgt
gtcctcaaggagcgtcatttgaaaatggaggtgcgtcattcaggacggcatgatgccctg
aacgcgatttatttcaacggctggcagggtgatcctccagcacggcgattgcgtttggca
tatcggttggtttgcgacgattaccgcggtggtgatgcgattcagttgatcgtggaatat
gcggaagtgattgaatgtgatgtatcgggtttccaagcaatttccagtggcgtacttgat
ccttag
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