Xylella fastidiosa 9a5c: XF_2696
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Entry
XF_2696 CDS
T00033
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xfa
Xylella fastidiosa 9a5c
Pathway
xfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XF_2696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfa03019
]
XF_2696
Enzymes [BR:
xfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XF_2696
Messenger RNA biogenesis [BR:
xfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XF_2696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
DUF7533
Motif
Other DBs
NCBI-ProteinID:
AAF85493
UniProt:
Q9PA24
LinkDB
All DBs
Position
complement(2574884..2576518)
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AA seq
544 aa
AA seq
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MMSDKPLTNLNFSSLDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGK
TLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIY
GGVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKD
IRFILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFP
AEEEKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETL
LNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAIS
FACERYAMSLPDIEAYIEQKIPVAAVTAELLAPLSRPERASNGNGDTVGDISPHSLDVLV
AQEWRRGKPRGSPGERDGRPRVGKGPRSDGGGGRRRTKFRLETERDSSVDGAVTPVFGVS
TGIVSAPGKEVGRNLGRRRRSRSMDSGESGHVVATTAQVAVKSGSQPSLLGRIGHRIRSL
LNMF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgataaaccgttgacaaatttaaatttttcttcacttgatctgcatccagcg
ttgcttactgggctgacaagagcaggatttacactctgtactccgatccaggcgcttact
cttccggttgcactggctggtcgtgatattgccggccaagcccaaacgggaaccgggaaa
actttggcgtttttggtggtggtagttaaccgtttacttagccgtccggggctagttaat
cgtaacccagaagatccgcgtgcgttgattttggcgccaacccgtgagcttgcgattcaa
atctataacgatgcagtgaaatttggtggcaatcttgggttgcgttttgcgttgatttat
gggggcgttgattacgataagcagcgcgaaatgttgcgcaaaggtgcggatgtggtcatt
gcgacgccggggcgcttgattgattaccttaagcagcacgaggtggtttcattgcgcgtt
tgtgagatttgtgttcttgatgaagcagatcggatgtttgacctggggtttatcaaggac
attcgctttatattgcggcgcttgcccgagcgttgtagccgtcagactttgctgttctca
gccactctcagtcaccgcgtgttggagttggcctatgagtatatgaatgagccagagaag
ctggtggcggagacggagactgtcactactacgcgggtccgtcaacgtatttatttccct
gccgaggaggagaaaatcccattgctgttgggtttgctctcgcgtagcgaggggatgcgt
actatggtatttgtcaatacaaaggtgtttgtcgaaggtgttgcgcgcgcactggatgag
gctggttaccgggtcggtgtgctgtctggagatgtgccacaaaggaagcgagagactttg
cttaatcgtttccagaaagggcaattggaaatactggttgccacagatgtggctgcacgt
ggattgcacattgatggcgttaattacgtatacaactacgacttaccgtttgatgcagaa
gattacgttcaccgtattggccgcactgcgcgtttgggagctgatggtgatgcgattagt
tttgcctgtgagcgttacgcgatgagtttgccggacattgaggcatatatcgagcagaag
atcccggttgcagcagtgactgctgagttgctggctccattgtcgcgccctgaacgtgca
tcgaatggtaacggtgatactgttggggatatttccccacattctcttgacgtgctggtt
gctcaggaatggcgtcggggtaagcccaggggtagccctggagagcgcgatggtcgcccc
cgtgtaggtaaagggccccggtcggatgggggaggtgggcgccgccgcactaaatttcgc
ttggagaccgagcgtgattctagtgtggatggggcagtcactcctgtatttggagtgtct
acggggatagtatctgctccaggtaaagaggtggggcgaaacctcggtcgccgacgtcgt
agtcgttcaatggattctggtgaaagtggccatgttgtcgccactaccgcccaagtggct
gttaagtcaggtagtcaaccgtcgctcttaggtcgaatagggcaccgtatccgctcgctg
ttaaatatgttctaa
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