Xylella fastidiosa 9a5c: XF_a0003
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Entry
XF_a0003 CDS
T00033
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xfa
Xylella fastidiosa 9a5c
Brite
KEGG Orthology (KO) [BR:
xfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfa03032
]
XF_a0003
03400 DNA repair and recombination proteins [BR:
xfa03400
]
XF_a0003
Enzymes [BR:
xfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XF_a0003
DNA replication proteins [BR:
xfa03032
]
Prokaryotic type
DNA Topoisomerases
XF_a0003
DNA repair and recombination proteins [BR:
xfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XF_a0003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AAF85572
UniProt:
Q9PHK2
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All DBs
Position
pXF51:1012..2994
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AA seq
660 aa
AA seq
DB search
MKLMIIESPGKIEKLSTILGDGWKIAASVGHVRDLPQKEMGVAAPDFKPSYELTERGEGV
VAKLKNLLKQADSVYLATDPDREGEAISWHLQQCLKLSNPLRVTFNEITANAVKASLVAP
RTIDVKRVAAQEARRVLDRLVGYMVSPELSRLTGKRLSAGRVQSPAVRLVVEREREIKAF
KVTNHFGAMLFFADAKTSGEWSAEWLTKPKFVAEDNPYFMDRDFAAAVAQVKAVVVKSFD
ESEAKRSPPPPFTTSTMQQAASVTLGVDPKAAMDAAQKLYEQGHITYHRTDNPNVSDESL
GDIYAVSVKLGLDIAEKPRKFKAPAGAQVGHPAVTPTHWEVEEAGETSDQKALYKLIRLR
AIACQLADARYAVRTVRLEAAQPVGGKNVEFEARGRTLIYQGWLKLIAGDQTEEEDGNEK
ESSNPIPVCAPGECLDVARGKLLEKKTKPPSHYTQATLVKKLESEGIGRPATYAAIMDNI
VSRGYVKTEKKYLFPTETGELIVDSLVGKFEFLDLGFTREIEESLDRIAQGESGYKAVIA
KVHDQLNMELSTLQVSATPKHPCQECGKPLRRIPGKNGHFWGCSGYPDCSVTFPDEGGKP
GQKKPVEVSNFACVKCGNPLKHLVKKGKGGYDFWGCSGFKEGCKATYEDKKGKPNFEKAK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgatgattattgaatcccccggcaagattgaaaagctgtcaaccatccttggc
gacggctggaagatcgcagcgagcgtggggcatgtgcgggatttaccgcaaaaagaaatg
ggcgttgctgcgcctgatttcaaaccctcttacgagttgacggaacgcggcgaaggcgta
gttgctaagttgaaaaacttgctcaagcaggccgatagcgtgtatctggcgactgaccca
gacagagaaggcgaagcgattagctggcacttgcagcagtgcttgaaactgtccaatcca
ctgcgcgtgacgttcaacgagattaccgcgaacgcggtaaaagcgtccctggtagcaccg
cgaacgattgacgtgaagcgggtagcggcgcaggaagcgcggcgcgtccttgaccgcctg
gtgggctacatggtcagccctgaattgagccgtctaactggcaaacgtctatcggctggg
cgggtgcaaagccctgctgtgcgcttagtcgtggaacgcgagcgggagattaaggcattc
aaggtgacgaaccactttggcgcaatgctgtttttcgcggacgcgaaaactagcggcgag
tggtcggctgaatggctaacgaaaccgaagttcgttgccgaagacaacccgtatttcatg
gacagggattttgctgctgccgtggctcaagtcaaggcggtagtcgtcaagtcgtttgac
gaaagcgaagccaagcgcagtccgccgccaccgttcaccacgtccaccatgcaacaggcc
gcaagtgtgaccttgggcgttgaccccaaagccgcaatggacgccgcgcaaaaactctat
gagcaaggccacatcacctatcaccgcacggataacccgaacgtgtcggatgagtcgcta
ggcgacatttacgcggtgtccgtcaagctcggcctggacatagccgagaaaccgcgcaag
ttcaaagccccagcgggcgcacaagtcggccatccggcagtgacccctacacattgggaa
gtcgaagaggcaggcgagacaagcgaccagaaggcgctttacaagctgattcgtcttcgc
gcgattgcctgccaattggccgatgcccgctatgcggtgcggactgtgcgccttgaggcg
gcgcagccggtcggcggcaagaatgttgaatttgaagcgcggggccggacactgatttat
caaggctggctcaagctgattgcaggcgaccagacggaagaggaagacggcaatgaaaaa
gagtcgtcgaacccgattcccgtttgcgcacctggcgaatgcctggacgtggcgcgcggc
aagctacttgagaagaaaaccaagccgcctagccattacacgcaagccacgttggtgaag
aagttggaaagcgaaggcatcggaagaccagcgacttacgccgccatcatggacaacatc
gttagcaggggctacgtcaaaaccgaaaagaaatatctgtttcccacggaaaccggcgaa
ttgattgttgattctcttgttgggaagtttgaattccttgacttgggattcacgcgcgag
attgaagaaagccttgaccgcatcgcccagggcgaatctggttataaggcggtcatcgcc
aaagtgcatgaccaattgaacatggagctttcaacattacaagtttcggccacaccgaaa
cacccttgtcaggaatgcggaaagccgttgcggcgcataccaggaaaaaacgggcatttt
tggggatgttcaggatatccagattgttctgtgacgtttccggatgaaggcggcaaacct
ggacaaaagaagcctgtagaggtatcgaatttcgcttgcgtgaagtgtggtaatcccttg
aaacacctcgtcaaaaaaggaaaaggcgggtatgacttttggggctgttccggcttcaag
gaaggctgcaaagcaacatacgaggataaaaaagggaaaccaaattttgaaaaggcaaaa
tga
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