Xylella fastidiosa subsp. fastidiosa GB514: XFLM_04420
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Entry
XFLM_04420 CDS
T01979
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xff
Xylella fastidiosa subsp. fastidiosa GB514
Pathway
xff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFLM_04420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xff03019
]
XFLM_04420
03009 Ribosome biogenesis [BR:
xff03009
]
XFLM_04420
Enzymes [BR:
xff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XFLM_04420
Messenger RNA biogenesis [BR:
xff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XFLM_04420
Ribosome biogenesis [BR:
xff03009
]
Prokaryotic type
rRNA processing factors
XFLM_04420
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADN62852
LinkDB
All DBs
Position
931121..934519
Genome browser
AA seq
1132 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GTDRHGFLPLKEISKDYFQAGLDHHKAGIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALEKLNIPNDMGVIIRTAGVGRDTQELQ
WDLDFLLHAWRAIAEAALSKPAPLLIYQESRLIIRALRDYFRADIGEILVDTEEMYQDAH
QFMRHVMPQSLRKLKYYKDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAI
DVNSSRATKGNDIEETAFQTNLEAADEIARQLRLRDVGGLVVIDFIDMSSSKHQREIETR
LQNCLKYDRARVQLSRISRFGLLEMSRQRLRPSLGESSQIVCPYCDGHGRMRSIESLSLS
IIRIVEEHAMKESTGQVLVQTPVEIANYLLNEKRRAINEIEKRHDAPIIIIADEQLHTPH
YEVTRLRENELSEETGKPSYQRNTPRKLPVHALTKSQLNIPPAPAVKSITPPQLAPTQEN
IPTIREQSAENRAHPIPELVSSLASWLKRIFGNTDKRQTASNSSHPAPLQQNRNGNVQRN
ERNRRDGQIATSNTQPQQQSSSHRDNYRHNESNNYPQIQNQCTADTNGKLRNESQTPKSS
AYVSKLPQMPRQPQPQLPKTPRTQSQPTQNSTKTILDKQPAPVLHGEDNTLQKAKPIPLT
AEAVLNNIPAPSMTATPSGKDQDALPTTSNVTQGTSNALIEAKSTTKTNINTNTDIEPQQ
NNHEGTGNNDGSNRRRRGRRGGRRRRRNTSLGNETNAVSESNSIKLSNDTETDNADNIES
PQALRPAMQENKRQPEFEFDDLAPAAPITAPLRKAIAAEREGISADLTTTAPQSIMETAS
RTHIASQMAPQSETSAASTTPNASVQATKTHTHKDVVSDSPSRTPYNAHSNTTRHSSGRR
LETLSTAHPSAKAPPSEHITPTSRSNANTKTTKTEIPNKPTNANSDTAARPTTTDVLVVT
NQPVIATKPSTTIEKAQTKVIPSTTYNNEHIETKRKIVTTESETTQPPVRKQRLPMQNPL
PKVVAPLEDKKQAPFVENTTQRNINNATTTSQNDKSLGFTKNNEENSDNNTL
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgttaatcaatgctacacaggccgaagagcttcgcgtagcaatcgtggat
ggccagagcctgtacgacattgatattgagcaaccatctaaagaacaaaaaaaatccaac
atctataaaggccgtatcacccggctggaaccgtctctcgaagccgcatttgttgattac
ggcacagatcgccacggctttttgccgttaaaagaaatctccaaagactacttccaagcc
ggtctggaccatcacaaagctggtatccgagagttattacgcgagggtcaagagatcgtc
gttcaggttgataaagaagaacgtggcaacaaaggagccgctctgaccacgttcatttca
ctcgccggtcgctacatggtgttgatgccaaactcgccatcagcaggcggagtctcacgt
cgcattgaaggcgaagatcgcgctgcgctgaaagaagcactggaaaaactgaacattccc
aacgatatgggagtgatcatccgtactgctggcgtgggccgtgacactcaagagctacaa
tgggatctggattttttactgcacgcttggcgcgccattgccgaagctgcattgagcaag
cctgctccattgctcatctaccaagaatcgcgcctcatcatccgcgccctacgcgactat
ttccgtgctgacatcggcgaaattctagtcgatacagaggaaatgtatcaggacgcccac
caattcatgcggcacgtgatgccgcaaagccttcgcaagctcaaatactacaaagacgac
atccctctgttcaatcgcttccagatcgaatcgcagatcgaaggtgcctacgaacgtaac
gtacgcctcccctccggcggctccattgtggttgatcaaacagaagcgctcactgccatt
gatgtcaactcttcacgagctacaaagggtaacgacattgaggaaaccgcattccaaacc
aacctggaagcagccgatgaaatcgcacgccaactgcgcctacgcgatgtaggtgggtta
gtagtgattgacttcattgatatgtcctcttcaaaacaccaacgtgagatcgaaacccgt
ctacaaaactgtctcaaatacgaccgtgcacgcgtgcagcttagccggatctcacgcttc
ggcctgttggagatgagtcgtcaacgcctacgcccaagcctgggcgaatccagccaaatc
gtttgcccatactgcgacggacacgggcggatgcgcagcatcgaatcgctatcactgtcg
atcatccgtatagtcgaagaacacgcgatgaaggaaagcactggacaggtgcttgtccag
acaccagtagagatagccaactacctgctcaacgagaagcgccgtgcaattaatgagatc
gagaaacgccatgacgcaccgatcatcatcatcgctgacgagcaattacataccccgcac
tacgaggtgactcgtctacgtgagaacgaattaagcgaagaaacaggcaaaccaagttac
caacgcaacaccccacgcaagctaccggtacatgcactcaccaaatcgcaacttaacatc
ccgccagcaccagcagtgaaatcgatcaccccaccgcaactggcaccaactcaagaaaac
ataccaacaatccgagagcaatccgctgagaaccgagcacaccctattccggaacttgta
tccagcctagcgagttggctaaaacgtatctttggaaatactgacaagcgacagaccgca
agtaacagctcgcatcctgcgcccctgcaacagaaccgcaatggcaatgtgcaacgcaac
gaacgcaaccgccgtgatggccaaatcgctactagcaacacccaaccacagcagcaaagc
agcagccaccgcgacaattatcgccataacgaaagcaacaactatccgcaaatccagaac
caatgcacagcagacacaaacgggaaattgcggaacgaatcacaaacaccaaaatcgtca
gcatatgtgtcgaaattaccccagatgccaaggcaaccccaaccacagctcccaaaaaca
ccaaggacgcaatcgcaaccgacacaaaacagcacgaaaacgatattagacaaacagcct
gcacctgtactccatggtgaagacaacacgctacagaaagcaaaaccgatcccgttaact
gcggaagcggtgcttaataacatccctgcgcctagcatgacagccacaccgtcaggtaaa
gaccaagatgctttaccaacaacatcgaacgtgactcaaggcacatcaaacgcgctgatc
gaagctaaatcaaccacaaagacgaacatcaatacaaatactgacattgaaccgcaacaa
aacaatcatgaaggtactgggaacaacgacggcagcaaccggcggcgccgtggtcgtcgt
ggtggtcgtcgtcgtcgtcggaatacttctctcggtaacgaaaccaatgctgtaagcgaa
agcaatagcatcaaactatccaacgacactgaaaccgacaatgcggacaatatcgaatca
ccccaagccttgcgccctgccatgcaggaaaacaagcgccaaccggagtttgagttcgat
gacctagcacccgcagctccgatcaccgcaccgttacgtaaggcaatagctgccgagaga
gaggggatatccgctgatctcacaactacagcacctcaaagcataatggaaaccgcgtcc
agaacgcatatcgcctcgcaaatggctccccaaagtgaaaccagtgctgcgtcaaccacg
cctaatgcctctgtacaagctactaagactcatacgcataaagatgtcgtttctgattcc
ccgtcaagaacaccttacaacgctcactccaacaccaccagacacagttcggggcgtcgt
ctggaaactctctctacggcacatccctctgccaaggcacctccatcagagcatataaca
ccaacatcacgctcaaacgcgaatactaaaaccacaaagacagagataccaaacaaacca
accaatgcgaacagcgatacggcagctcgcccaacaaccactgatgtgctggttgtaacg
aatcaaccagtgatagcaaccaagccttcaacaacgatagaaaaagcacaaaccaaagtt
attccctccactacatacaataatgaacacatcgaaacgaagcgaaagatcgttacaacg
gaatccgaaacaacccaaccaccagtacgaaagcaacgcttgccgatgcaaaatccacta
cccaaggtagtcgctccactagaagacaagaagcaagccccattcgtggaaaatacaacc
caacgtaatattaataacgcgaccacaacatcgcagaacgacaaatcattaggttttaca
aaaaacaacgaagaaaatagtgacaacaatacactataa
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