Xylella fastidiosa subsp. fastidiosa GB514: XFLM_06270
Help
Entry
XFLM_06270 CDS
T01979
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xff
Xylella fastidiosa subsp. fastidiosa GB514
Pathway
xff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFLM_06270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xff03019
]
XFLM_06270
03016 Transfer RNA biogenesis [BR:
xff03016
]
XFLM_06270
Enzymes [BR:
xff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XFLM_06270
Messenger RNA biogenesis [BR:
xff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XFLM_06270
Transfer RNA biogenesis [BR:
xff03016
]
Prokaryotic type
tRNA degradation factors
XFLM_06270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
KH_Vigilin
Motif
Other DBs
NCBI-ProteinID:
ADN63187
LinkDB
All DBs
Position
1369076..1371178
Genome browser
AA seq
700 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLD
PEIDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAG
TANAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDA
LVIALKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFGE
LEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTA
RDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLD
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS
DILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEMDK
ALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
ERVGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEEVASI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtatggcaagcataccgtgaccctggaaaccggc
gaagtcgcccgtcaggcgagtggagctgttatcgtcaagatggatgacactgtgcttctg
gtcactgttgttgctgcaaaaactgcgcgagaggggcaggattttttcccattgacggtt
gattatcaggagaagttctatgccggtgggcggatcccgggtagcttctttaagcgtgaa
ggccgtgccaccgaaaaagaaacgttgatttctcgattgattgaccgtccgatccgtccg
ttgtttcctgaagattacaagaacgaagttcagattatcgctatggttatgtcactcgat
ccggaaatcgacggtgatattcccgcaatgattggtgcttcagctgcattatcactggct
ggtattccgtttaagggaccgattggtgctgctaaggttggttacaatgatggtcaatat
atcctcaatcccactgtcagtgaactgaaaaaatctcagttggagcttgttgtcgctggt
actgccaatgccgtgctgatggttgagtctgaggctgcattgctttccgaagaagtaatg
ttaggggcggttattttcggtcatcgcgaaatgcaaaaagtgattcaggtgattgattca
ctgaccgcagaagcttgtacgcagccgtctgattgggtgcccccggccaagaatgatgct
ttggtcattgcgttgaagaaagtaattggtggtcgcttgtccgacgctttccatatcaga
gacaagttgcagcgtcgcgacgcgatcgctgctgttaaagatgatgtgattcagcagttg
gctggccgtcttgaagttgagggctggaacttggcggaattgttaaaggaattcggtgaa
ctggaataccgtactatgcgtgatgcactgttggacactaaagtccgcattgatggacgc
tctctggaagctgtacgcccgatcaccgtaaaggttggggttctgccgcgtgttcatggt
tccgggttatttacacgtggagagactcaagcgattgtagtcactactttgggtacagcg
cgcgatggccaagtaattgatgcagtcactggtgaatataaggaaaattttttattccat
tacaacttcccgccatattcagtgggcgaatgtggccgttttggagtaccgaagcgccgt
gagatcggtcacggccgtcttgctaggcgcggggtgttggctgtgatgccgagtttggat
gaattcccatacacgatccgtgttgtctctgagatcaccgaatcgaacggttcctcatct
atggcttcggtgtgcggttcctcgctggcgctcatggatgctggtgtgccggtgaaagca
ccagtggctggcattgcgatgggcttagtcaaggaaggggagcgctttgttgtgttgagc
gacattctcggtgacgaagatcaccttggcgatatggatttcaaggttgctggtacctcc
gaaggagtgtccgcgttacagatggacattaagatcgaaggcataacagaagagattatg
aggcaggctctacagcaggctaaagttggacgtctgcatatccttggcgagatggacaag
gcactggctgcaccgcgtgccgagttgtccgactacgctcctcgcctgctgacgattaag
attcatcctgacaaaatccgcgatgtcattggtaaaggtggttcgaccatccaggcgatc
actaaggagactggaacacagatcgatattcaggacgatggtacgatcgttatcgcttca
gtcaacaatgctgcagcccgggaggctaagcgtcgtattgagcaaattacctcggatgtt
gagccgggtcggatttatgagggcaaggttgctaagattatggattttggcgcttttgtg
actattttgcctggaaaagatggtttagtgcacgtttcccagatatccagcgagcgtgtg
gagcgtgttggcgacaagctgaaggaaggcgatgtggttcgtgtgaaggtcttagaagtt
gataagcaaggtcgaatccgtctttcgatcaaagcagtggaggaagaggttgccagcata
tga
DBGET
integrated database retrieval system
