Xylella fastidiosa subsp. fastidiosa GB514: XFLM_09750
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Entry
XFLM_09750 CDS
T01979
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xff
Xylella fastidiosa subsp. fastidiosa GB514
Pathway
xff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFLM_09750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xff03019
]
XFLM_09750
03016 Transfer RNA biogenesis [BR:
xff03016
]
XFLM_09750
Enzymes [BR:
xff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XFLM_09750
Messenger RNA biogenesis [BR:
xff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XFLM_09750
Transfer RNA biogenesis [BR:
xff03016
]
Prokaryotic type
tRNA degradation factors
XFLM_09750
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
PF0610-like_N
HTH_20
HTH_IclR
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADN63833
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Position
2129071..2131587
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AA seq
838 aa
AA seq
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MKKKTTKGAQAPHTAITTTSAAAKRQRVSVQSKVKVPSNKKKQGADVKQQEDAKLSPVKR
LRQPNAPRQQAPKAPSTKKASVRSARAAASVPFQDQHAAREAERYAEPIASREAILDLLD
ACDGPQTAEEIADRFGVTDRIEILGRRLGAMVRDGQLVQNRRGGFAPVQHTNLIAGTVIA
NPDGFGFLKPDEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR
LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPDTRRPAIGRIL
AVLGEALTPSLVVETAIHGHQLPHVFPQDVLDAAAAVPLTVTPGMLGGRVDLRALPLVTI
DGEDAKDFDDAVYCESNRGGVRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPM
LPETLSNGICSLKPNVDRMCFVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGE
EDAQAQAQIGTLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLM
RNDAHKLIEECMIVANVQAAHFLLNAGVQAPYRIHERPPESKYADLLEFLKEFKLSLPAW
GKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSADNRGHFGLALDGYAHFTSPIR
RYPDLLVHRAIKHALSGAAPDCFLYTPRDMVALALVCSSRERRADEAEREVDERYRAAWM
ERHVGSEFDGVISGVTSFGLFVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRV
FRLGDRLRVLVLKASMEERKIDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaaaaccactaagggcgctcaagcgccacatactgcaattaccactacgtct
gctgctgcaaagcgtcagcgtgtctcggttcaatccaaggtcaaggtgccttcgaacaag
aagaagcagggtgctgacgttaagcaacaggaagatgccaagttgtcgccagtaaagcgg
ttacgtcaaccgaatgctcccaggcagcaggcacccaaagcgccttctactaagaaggca
tcagtacgttcagctcgggctgcagcatcagtgccttttcaggatcagcatgcggcgcgt
gaggccgaacgctatgctgagccgattgcgagtcgtgaggcgatccttgatttgctggat
gcgtgcgatggcccacagacggcggaggagattgctgatcggttcggggtgactgatcgc
attgagattcttgggcgccgtctgggtgcgatggtacgtgatggtcagttagtgcagaac
cgccgtggtggttttgcgccggtgcaacatactaatctgatcgctggtacggtgattgcc
aatccggatggtttcggcttcctcaagccggatgagggaggggacgatctgtttttacct
cccttcgagatgcgcaaggtgatgcacggtgatcgggtgctggtgaatctcacgggcatt
gaccgtcgcggtcgccgtgaggggatgattgcacgtgtgttggaacgtcggatgagccgt
ctggtcggacgttttttctatgaacttggcatcgcttatgttgagccggacgataagcgt
ttgcagcgtaacgtgcagattccgccggagcacatcggcggtgcatcggaagggcaattg
gtggtgtgtgaattggttgtgcctccagacacacgccgtccggcgattgggcgcattttg
gcggtgcttggtgaggcgttgactccgtcgttggttgttgagacagctattcatggtcat
cagttgccgcatgtgtttccacaggacgtgttggatgcggcggcggcggtgccgttgacg
gtaactccagggatgcttggcggacgtgtggatctgcgtgcgctgccccttgtgacaatt
gatggtgaggatgcgaaagattttgatgatgcggtgtactgcgaatccaatcgtgggggg
gttcgtttggtcgtggcgattgccgacgtttcgcattatgtgcgtccagggacgccgctg
gacgaagaggcgctcacgcgcgctacatcggtgtatttcccgggctttgttgtgccgatg
ttgccggagacgttgtccaatggaatctgctcgttgaagcccaatgtggacaggatgtgt
tttgtgtgtgagatgcagatcgatcgcaagggggaggtcaagtcttcatccttctacgag
gcggtgatgaactcgcatgcgcgtctgacgtatacgcaggtttggaaggccgtgggtgag
gaggatgcgcaggcacaggcgcagattggtacgttgttgccgcaggtgcagcagttgcat
cggttgtatcaggtgctggccaaggcgcgcgctcagcggggggcgattgaatttgagtca
tcggaagtccgttttgtgctggacaatcgcggcgaggtgactcaggccgggatgttgatg
cgcaatgatgcgcataagttgattgaggaatgcatgattgttgccaatgtgcaggccgcg
cattttttgctcaatgcgggggtacaggcaccgtatcgcatccatgagcggccaccggaa
agtaaatacgccgatttgttggagtttctcaaagaatttaagctcagtttgccggcgtgg
gggaaggtgcagcccggtgactttactaagttgctgaaaaaggttcgggagcgtccagag
gcggcattgctggagtcggtgttgttgcgcagccaaagtttggcggtgtattcggctgac
aatcgcggccatttcggtttggcgctggatggctatgcgcactttacttcgccaattcgg
cgctatcctgatcttttggtgcaccgtgcgatcaagcatgcgctcagtggtgctgcaccg
gactgcttcctgtatacgccgcgtgacatggtcgcattggcattggtgtgttctagtcgt
gagcgtcgcgccgatgaggcggaacgcgaggtggatgagcgctatcgtgctgcatggatg
gaacggcatgttggcagtgagtttgatggtgtgatcagtggtgtcaccagtttcggtttg
ttcgtggagttggagcagtctaaggtcacagggttggtccatgtgacccaattgccgcag
gattattattcctttgatccgattcgcaaggtgctggttggtcagcgtcgtggccgtgtg
ttccggcttggtgatcgcctgcgtgtcttggtgcttaaagccagtatggaggagcgtaag
atcgatttccggttggttgaccagtcaatgcatgagcaggttacgcgggaggtgtcgcct
ccggtgctacgtggcaaggcgacgaccaagcgtaaaaagggcgtcaagacgcggtga
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