Xylella fastidiosa Hib4: XFHB_00180
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Entry
XFHB_00180 CDS
T04925
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xfh
Xylella fastidiosa Hib4
Pathway
xfh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XFHB_00180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfh03400
]
XFHB_00180 (mfd)
Enzymes [BR:
xfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XFHB_00180 (mfd)
DNA repair and recombination proteins [BR:
xfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XFHB_00180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
SWI2_SNF2
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALR05537
UniProt:
A0ABC8AAL2
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All DBs
Position
39934..43515
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AA seq
1193 aa
AA seq
DB search
MSPSSFPPPLLPRAGQLRAFWRAPVSPTALAWHIACAAEAHRGPLLLVTHDNHSAHQVEV
DLQTLLAHCPELPVIGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTL
MQQLAPLSYIVGGSFDLKVGQRLVLDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYP
MGTDVPLRIELLDEEIDSIRTFDPESQRSLNQVDVVHMLPGREVPLDPAVLERVLVRLRE
RFDLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSSDVLVLTALG
VSNAADAFWAQTMQRYEQRCHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSVEHAHI
DKAEALDEQPLPVATKDASVGQALRAFLADYAGRVLIAATSPGRREVLLELLATADLQPE
VLPDFRSFFLSVPEVRDLREANRDSGNGVSGANDAAAFHVIASQGGSLPTFAITVAPLED
GFSLSVPPIAVLTERQLFPERVNPVRRSRRVGREPEAIIRDLGELSEGAPIVHEDHGVGR
YRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQWSK
AKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFEETPDQLAAIETT
LRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDR
FADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVDEEQ
RFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFITP
WDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPERELER
VMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYA
YLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGF
SLYTELLERAVRSIKQGKLPDLDAGQEERGTEVDLHIPTLIPEDYLPDVHTRLTFYKRIS
TARDSNALRELNVEMIDRFGVLPDAAKHLFAIAELKLQATALGISKLELGENGGRIMFGA
KPIIDPMAVIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAARGLLAALTP
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccatcctcctttccccctccgctgctgccccgtgccgggcagctccgtgcattt
tggcgtgctccggtctctccaacggcgcttgcttggcatatcgcctgtgctgctgaggca
cacagaggaccgttgctgttggtcacgcatgacaatcacagtgcgcaccaggttgaggtt
gacctacagactctattggcgcattgcccagagttgccggtcattggtttcccggattgg
gagacgcttccttacgaccaattcagcccggatccgaatattgtcagccagcgtttggcg
acgttgcatcggttgccttcattagcacgcggtattgtcgtcgtgccggtacagacgttg
atgcagcagttggcaccgttgagttacatcgttggtggcagctttgatttgaaggtgggg
caacgcttggttctggatgctgagaagcagcggttggagcgggcgggttaccgcaatgtg
ccgcaggtgatggaccccggggattttacggtgcgtggggggctgcttgatgtttatccg
atgggtacggatgtaccgctgcgaatcgaactattggatgaggagattgattcaatccgt
acgttcgatcccgaatcgcagcgttcgttaaatcaggtcgatgtcgttcatatgctgccc
ggtcgcgaagtgccgttggatcctgcggtgcttgaacgcgttttagtgcggttgcgtgag
cgtttcgatctggatactcggcgcagtgcgttgtatcaggatttgaaagccgggttagct
ccctctgggatcgagtactatttgccgcttttttttgagtcggggcgtggtgggaaacac
gcgaccgcgacgctttttgattatttgagttcggatgtattggtgttaacagcactgggg
gtctctaacgctgccgatgcgttctgggcgcagacgatgcagcgttatgagcaacgttgc
cacgatattgagcgcccgttgttaccgccgcaggagctataccagtccccggatgcgttg
cgtgaacgcttgaaccgtttgccgcgcattgaggtttggtcggtcgaacatgcgcatatc
gataaagcagaggcattggatgaacagccattgccggtggcgactaaggatgcttccgtt
ggacaggcactgagagctttccttgctgattacgctggccgtgtgttgattgccgctacg
tcgcctggtcgtcgtgaggtgctgcttgaattgctggccaccgccgatctgcaaccggag
gtattgcctgactttaggtcgttttttctctctgtgcccgaagtgcgtgatctgagggaa
gccaatcgcgatagtggcaatggcgtgtcaggtgcgaatgatgcggctgcttttcacgtc
attgcttcgcagggcgggtccttgccaacgttcgcgatcactgtggctccgttggaggat
gggttttctctcagtgtgccgcctattgcggtgcttaccgaacgtcaattgttcccggag
cgggttaatccggtgcgccgcagtcggcgtgttgggcgtgagccagaggcaattattcgt
gatctgggtgagttgtccgagggtgcgcccatcgtgcacgaggaccacggggtcggtcgt
taccgcaaactgatcaccatgaacgtcagtggtatgcctggtgagtttgtggagatcgag
tatgcaaagggggaccgtttatacgttccggttgcccaattgcatctgattagccgctac
tcaggcgcttcgccggagacagcgccgctgcactcgttgggtggtgagcaatggagcaag
gccaagcgcaaggcggccgaaaaggtacgcgatgtggctgcggagttgttggaaattcag
gcgcggcgtcaggcgcgtgcaggcttggctttgcgcattgatcgtacgatgtatgaacct
tttgcagcaggtttcccattcgaagagactcccgatcagcttgcagcgattgagacgacg
ctgcgtgatctgcaatccagtcagccgatggaccgggtagtgtgcggtgatgttggtttt
ggcaaaacggaggtggcggtgcgtgctgcattcgctgcagccagtgcaggaaaacaggtt
gcggtattggtgccgacgacgttgctagccgaacagcactatcgaaatttccgcgatcgc
tttgccgattatccgattagagtggaagtgctgtcgcgcttcaaaagcactaaagaaatc
aaggccgagttgcagaaggtcagtgaaggcaccatggatgtcattgtcggcacccatcgg
ctgttgcaaccggacgtcaagttcaaagacttgggtttagtcattgtcgacgaggaacag
cgtttcggggtgcgtcagaaggaggcgctgaagtcgttacgtgcgaatgtgcatttgttg
acgctgacagctacgcccatcccgcgcacgctcaatatggcaatggcggggttgcgtgat
ttgtcgatcattgcgacaccaccgctgaatcggctggcggtgcagacgtttatcactcct
tgggataatgcgctgttgcatgaggctttccagcgtgaactagcgcgtggtggtcagttg
tactttctacataacgatgtggagagtatcggcaggatgcagcgtgatctggcccaactg
gtgccggaagcgcgtattggtattgcccacggccagatgcctgaacgcgagttagagcgt
gtcatgctggatttccagaagcagcacttcaatgtgttgctgtcgacgacgattatcgaa
tccggtattgatattcccaacgctaacaccatcatcatcaaccgcgctgaccgctttggt
ttggcgcagttgcaccagttgcgtggccgtgtcggtcgttctcaccatcgcgcctatgct
tatttggtggttcctgaccggcgtagcatgacggcggatgcagagaaacgcttggaggcg
attgcgtcaatggacgagttgggtgcgggctttactttggcgacccatgatctggaaata
cgcggcgctggtgagttgctcggtgaggatcaaagcgggcagatggccgaggtcggcttc
agcttatataccgagttgcttgagcgcgcggtgcgcagcatcaagcaaggtaaactgcca
gatcttgatgcaggtcaggaagaacgtggcacggaggtggatttgcacatacccacgttg
atcccagaggattatttgcccgatgtgcatacccgtttgacattctacaaacggatttcc
acggcccgtgacagcaatgcgctgcgtgagttgaatgtggaaatgattgaccgttttggt
gtgcttccagacgctgctaaacatctgtttgcaatcgctgagttgaagttgcaagccact
gcattgggtatttccaagttggaattgggggaaaatggtggccgtatcatgtttggagcc
aaacccatcattgatcctatggcggtgatccagctcgtccaaaagcaatccaaactgtat
tcgatggaggggccaagtaaattaaaactcaagttgcctttgccggaaccggccgatcgc
ttcaacgctgcacgagggttgctggctgcgttgacaccttaa
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