KEGG   Xylella fastidiosa Hib4: XFHB_00355
Entry
XFHB_00355        CDS       T04925                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
xfh  Xylella fastidiosa Hib4
Pathway
xfh02024  Quorum sensing
xfh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xfh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XFHB_00355 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    XFHB_00355 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xfh03019]
    XFHB_00355 (hfq)
   03036 Chromosome and associated proteins [BR:xfh03036]
    XFHB_00355 (hfq)
Messenger RNA biogenesis [BR:xfh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     XFHB_00355 (hfq)
Chromosome and associated proteins [BR:xfh03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    XFHB_00355 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ALR05560
UniProt: A0ABC8AAR5
LinkDB
Position
complement(88100..88378)
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQSGSDTLQINDDEVE
NT seq 279 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaggatccttttctaaacgcattgcgtcgcgaacgggta
cctgtgtcgatctatctagtgaatggcatcaaactacaaggcacaatcgaatcattcgat
caatttgtggttctactacgtaatactgtcagccagatggtgtacaagcatgctatttcc
acagtggtacctgcgcgcaacgtacgagttgggccaggtggaggctatgtgcagtcaggc
agtgatacgttgcaaattaacgatgacgaagtggaatga

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