Xylella fastidiosa Hib4: XFHB_01040
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Entry
XFHB_01040 CDS
T04925
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfh
Xylella fastidiosa Hib4
Pathway
xfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFHB_01040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfh03019
]
XFHB_01040
03009 Ribosome biogenesis [BR:
xfh03009
]
XFHB_01040
Enzymes [BR:
xfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XFHB_01040
Messenger RNA biogenesis [BR:
xfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XFHB_01040
Ribosome biogenesis [BR:
xfh03009
]
Prokaryotic type
rRNA helicases
XFHB_01040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_19
CMS1
Cas3-like_C_2
AAA_22
P-loop_SecA
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ALR05674
UniProt:
A0ABC8AB74
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All DBs
Position
complement(260106..261932)
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AA seq
608 aa
AA seq
DB search
MSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQ
QLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKL
PASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVAKFFGRISNALVVGAEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSVPTRAQRERSEPPSEHVKRSSSFKQTERPNHTEHPKRP
QRNAPARNTPEFGMESYRIEVGRIHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLD
LPAEMPHEILQHLKKVWVSGQQLQMRRIDTTETTATAREFKSKPGGAGKFPPKPHHNKST
KPKPPYSG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccatcctctacgccgctgctgtttgcagatctcggcctctccgatgctgtg
atgcaagccgtcacaaaaatcggttatgaaactccgtcgcccatccaggcggcgaccatc
ccagccttgctcgctgggcgcgatgtgctgggccaagcccagaccggcactgggaagact
gccgcattcgcgctaccgttgctcacacgcaccgttctgaaccaggtcaagccgcaagtg
ctcgtactggcacccacccgcgaactggctatccaagttgccgaagcattccagcgctat
gctgcctcgatctctggcttccgtgtcctacccgtgtacggcggtcaatcctatggccaa
caactggccgcactgaaacgcggtgttcatgtgatcgtcggtactccgggccgggtgatt
gatcacctagagcgcggcaccctggacctatcggaattaaaaacgctggtcctcgacgaa
gccgacgaaatgctgcgtatgggtttcattgaggacgttgaagaagtgctacggaagttg
cccgcttcacgccaggtcgctctgttctcggcaaccatgccaccacagatccgccgtatc
gcacaaacctatctacaagatccgattgaagtcaccatcgccaccaaaaccacgaccgcg
gccaacatccgccagcgttactggtgggtcagcggcctccacaagcttgatgcactcaca
cgcattcttgaggtggaaaccttcgacgcaatgattatcttcgtgcgcaccaaagctgcc
accgaagaattggccgagaagttgcaggcacgtggcctgaccgccgcagcgatcaatggc
gatatgcaacaagcgcaacgcgaacgcaccattcaccaactcaaagatggcaagctggat
atcctcgttgccaccgacgtcgccgcacgtggtttggacgtagaacgtatcagccacgta
ctgaactacgacatcccttacgacgttgagagctacgtccaccgtatcggacgcactggg
cgtgccggtcgcagcggcgaagcaatcctctttgtgactccacgcgaaaaaggcatgctg
cgccagattgaacgtgccactcaccaaccgatcgaagccatgcaactgcccagtgtggat
gcagtcaacgacacgcgcgtcgccaaatttttcggacgcatcagcaatgctttggtggtc
ggcgctgaaatcgacttctaccgcaaactgcttcaacgtttcgagagcgagcacaatgtc
cctgccattgagatcgctgctgccctggcacgactccttcagggggatagccccttcctg
ctgagtgtcccaacgcgcgcccaacgcgaacgcagcgagccaccatcggagcatgtcaaa
cgctcctcatccttcaagcagacagagcgcccaaaccacactgaacaccccaagcgcccc
caacgtaacgcaccagcacgcaataccccggaattcggtatggagtcttaccgcatcgaa
gtcggccgcatacacggtgtgaagccagctaatatcgtcggtgccatcgccaacgaagct
ggattagagagccgctacattggccggatcgacatccgtgacgatcactcggttctggat
ctccccgcagagatgccacacgaaatcctgcaacacctaaaaaaggtctgggtatcagga
cagcaactacaaatgcgtcggatcgacacaaccgaaacaaccgcaactgcacgggaattt
aagtcaaaaccgggtggcgctggcaaattcccgccgaaaccgcatcacaacaaatcaacc
aaaccaaaaccaccatacagcggttga
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