Xylella fastidiosa Hib4: XFHB_01730
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Entry
XFHB_01730 CDS
T04925
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xfh
Xylella fastidiosa Hib4
Pathway
xfh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XFHB_01730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfh03400
]
XFHB_01730
Enzymes [BR:
xfh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XFHB_01730
DNA repair and recombination proteins [BR:
xfh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XFHB_01730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Lambda_tail_I
ResIII
V_ATPase_I_N
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALR05786
UniProt:
A0A1L2AYM0
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All DBs
Position
427760..431488
Genome browser
AA seq
1242 aa
AA seq
DB search
MNTPHDPYLTLPLHGVRLIEASAGTGKTFTMATLVTRLVVERGWRIDHILAVTFTEAATQ
ELRTRIRERLILAARLVPQAAELPVPLPSAQPQIPHPTPHPHNAPRITPGVANSASPEPP
DVALTLQILRTHLAATDETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQS
FIPPTLLASDRDLLHELAADIWRQEIADPEAIQDLIHLWPAGAPMLAQDLTDLLYQPHLS
PAPSLEAPVALPDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLNKKSYKADALNDL
WDWMERWSLAPNAYPELHPKLQTLTVAALQAGTNKQGAGRTPNSPVSEAVQHYLDALTTI
ETARAQHRLRRLHRLRVAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRSLRQ
QYRMALVDEFQDTDVAQWRIFHHVFGDTEHAHTADLTPALFLIGDPKQAIYGFRGGDVHT
YLAAAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGTHCRDTD
LSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADAQTGRA
LLDGRPVGAGDIAVLVRSHREATLMQQALARAGIPAVAAGKRSLLTTDEANEALALLLAL
LHSADEGRLRTALSTVLVGLTAETIATFDHDSVAFRHWQRQALHWRERLHSGGPLGLLTD
LCALHAARLLSLFDGERRLSNYLQLGELLQQVHLRALGLHGLIDWLARRIAEAKNDDETQ
LLRLESDARRVQIVTLHKSKGLEYPLVFLPYVAIGHSHAGPGRYCVVHDAQQGRCLHWCL
DKQAPEWQRAETAWKQEQRAEEARLLYVGLTRAKHALWIATGTFYQTERTALWPLLGDPQ
AVTAQPGIVFDTAVPPAILPRLTPEQPHSVPPARTAQRALLSDWWVYSFTQLAHAKAEPA
PDGGRRIAEPLTGGQDEPAWPQEAIQQPLPGSEVPVDPRFIGIRFGVALHEVFERTDFLA
WSTWRANAPVPATERAVLLHALRGSGYVAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDV
PTTERRPEIEFQFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHA
GRWYVLDYKSNRLPNYTPAHLSVAMTDSEYDLQALIYTVALHRWLRFRLCDAYDYARDMG
GIRYLFCRGMDATRPDAAGVYTQSFAPALIAAVDAMFSGACP
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccccccatgacccctatctgaccttgcccctccatggcgtgcgtctgattgaa
gcctccgcgggcactggtaaaaccttcaccatggccaccctcgtcacccgacttgtggtc
gaacgaggctggcgcatcgaccacattcttgcagtgaccttcaccgaggccgcgacccaa
gaactacgcacccggatccgcgagcgcctcatactcgccgcccgtctcgtcccgcaggct
gctgaactgccggtgccccttccctccgcacaaccacaaataccgcatccaacaccccat
ccccacaatgcaccccgcatcactcctggagtggccaactccgcctcccctgaaccccca
gatgttgcgttgaccctacagatcctgcgtacccacctcgccgctacggatgagacccca
cacgccctgcactcccgtttacaacaggccgccgatgaaatcgacctcgcggcgattttc
accattcatggcttctgcacacgcgtactgcgcgaacatgccttgcataccggacaaagc
ttcattccgcctaccttactggccagtgaccgcgatttactacacgaactggccgccgac
atatggcgtcaagaaattgctgatcccgaggccatccaagacctcatccacctctggccc
gcaggcgcaccaatgctggctcaggacctgacagacctgctttaccaaccgcacttatct
cccgcgccatcgctggaagcaccagtggcgctgcctgatgctgcccttgccgtcgctgag
accacattgcgccacctctggcagaccgagggcgcggcactgcgcagcgcactgcacacc
gccttagaagagggcgtcctcaacaagaaaagctacaaagccgatgcactgaacgatctc
tgggactggatggaacgctggagcctcgcacccaacgcctatccagagctacaccccaaa
ctgcaaacattgaccgttgcggccttgcaagccggcaccaataaacagggggccggacgc
accccaaactcccccgtgagcgaagccgtacagcattacctggacgcactgacgaccatc
gaaacagcacgcgcccagcatcgcttacgtcgcctgcatcgcttgcgtgtcgcagcccgc
ctccgccttaccgcactcaaacgccagcgtcgcgtacagacctacgatgatttgattcaa
cgtgtcgcccaggcactggatggcccgcatcgcctcgccttggtgcgctccctgcgccaa
cagtaccgcatggccctcgtcgatgaatttcaagataccgacgtggcccaatggcgcatc
tttcatcacgtctttggtgataccgagcacgcacacaccgccgacctcacacccgcattg
tttttgattggcgaccccaaacaggccatctatggctttcgtggcggcgacgtacacacc
tacctggccgccgctgcccgtgccgaacgcgcgcccccgctggagcgtaacttccgctcc
cgtcccctattactgcgtgccattgaagcactgtatacccaagccggcgacgcagccttc
ctcaccccaggcattgccttccaccccgtacagccaggcacccactgccgcgatacagac
ctcagcaacgccggagttcccgcacccgcgttacaagtgtggcaagccccaccgccattg
gacagcaccgccaagggcaaacccaaaccctggaatgccgatgccgcgcgcgccctgtgc
acggatgcctgcgtccatgccattcaccaatggcttgccgacgcacagaccgggcgcgcc
ctgctggatggccgccccgtgggtgccggcgacatcgccgtattggtgcgcagccaccgt
gaagccacattgatgcagcaggccctagcgcgtgcgggcattcctgccgttgctgctggc
aaacgcagcctattgaccaccgacgaagccaatgaagccctggcactattgctggcactg
cttcacagcgctgacgaaggccgtttgcgtaccgcactgtccaccgtcctcgtgggcctc
accgccgagacaatcgccacatttgaccatgacagcgttgccttccgtcactggcagcgc
caggcgttgcactggcgcgaacgcttacacagtggcggccccttgggattactgaccgac
ctatgcgcgctacatgccgcacgcttgctcagcctcttcgacggtgagcgtcgtttgagc
aactacctacaactgggcgaactactccagcaagtccacctgcgcgccctgggcttacat
ggcttgattgattggttggcacggcggattgctgaagccaagaacgatgacgaaacacag
ctattgcgtttggaatcagatgcgcgccgcgtgcagatcgtcaccctgcataaaagcaaa
ggcctggaatacccactggtcttcctgccttacgttgcgattggccattcccatgccggc
ccaggccgttattgcgtcgtacacgatgcgcagcaaggacgctgcctgcattggtgcctt
gataaacaagcaccagagtggcaacgcgctgaaacagcgtggaaacaggagcagcgcgct
gaagaagcacgcctactctacgttggcctgacccgtgccaaacatgcactgtggatcgct
accggcaccttctatcagacggaacgcaccgccttatggccactactgggtgatccccag
gcagtgacggcacagccgggcatcgtctttgatacagctgtaccaccggcaattttgccc
cgtttgaccccagaacagccgcacagcgtcccccccgcacggaccgcacagcgtgccctg
ctttcggattggtgggtgtacagctttacccaattggcgcatgccaaagcggaacctgct
cctgatggggggcgccgtattgccgagccactcaccggagggcaggacgaaccagcctgg
ccacaggaggcaatccaacagcccctgcctgggagcgaagtgcccgtcgacccccgtttt
atcggcatccgttttggtgtggcactgcatgaagtgttcgagcgtaccgacttcctagcc
tggagcacttggcgcgccaatgcccccgtgcctgcgacggaacgtgccgtgttgctccac
gccctgcgtggcagcggctacgtggctgaagacgtggaggccggtgtcgccttgctaacc
ccattggtgggccataccttgaccagtgtccttcccgagggcgtgcgtttgtgcgatgtg
ccgacaaccgagcggcgaccggagattgaattccaatttgtcatccaggccacggcggtg
gatgccttgcttgccttgctccatgaccacggcttgctacagcagcgtcagagcttcggc
atgcggcgtcgcttggaaggactgatgaccggcatgatcgacctcatttatcgccacgcc
ggacggtggtacgtcctggattacaaaagcaatcgcctgccgaattacacgccagcgcat
ctttctgtggcgatgactgacagtgaatatgacctgcaggcgctgatctacaccgtggcc
ctgcatcgctggttgcgcttccgtttgtgtgatgcgtatgactacgcacgtgatatggga
ggcatccgttacctgttctgccgcggtatggacgcgacgcgtcccgatgcagccggcgta
tatacgcaatcctttgctcctgccttgattgccgcggtcgatgcgatgttcagtggagct
tgcccatga
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