Xylella fastidiosa Hib4: XFHB_03310
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Entry
XFHB_03310 CDS
T04925
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xfh
Xylella fastidiosa Hib4
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xfh03009
]
XFHB_03310 (rlmD)
Enzymes [BR:
xfh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
XFHB_03310 (rlmD)
Ribosome biogenesis [BR:
xfh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
XFHB_03310 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_11
PCMT
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltr_RsmB-F
RrnaAD
Methyltransf_15
Methyltransf_12
Methyltransf_23
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
ALR07660
UniProt:
A0ABC8AGI1
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All DBs
Position
769895..771226
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AA seq
443 aa
AA seq
DB search
MARQNRFDRTSFQTQIIDLSHDGRGVARPHGEGDKVTFVTGALPGEVVIVEPVARNRHFD
EARVVEVLQASPQRVIPRCSHFGVCSGCVLQHLAEDAQVVSKQRVLLESLERIGRVSPER
VLPALAAESWGYRRKGRFSVRWVEKKGRTLVGFREHDPRFVADVSVCHTVVPQVGEKIAL
LATLLNSLDGRRDVPQIEFIAGDAVVALTVRHLQPLSEADRLVLIEFGKEHGIAIFLQSG
GVESVRLLWPDEVLLAFRLKPWDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERV
LDLFCGLGNFTLPLARTVDEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDA
PWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLR
AVGAMDMFPHTAHVESIAVFDRC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
gtggctcgccaaaatcgtttcgatcgtacgtcatttcaaacgcagattatcgatctcagt
catgatgggcgtggggttgcacgacctcatggcgagggagataaggtgactttcgtcact
ggtgcgcttccaggtgaggtggtgattgttgagccagttgcgcgtaatcgtcattttgat
gaggcacgtgtcgttgaggtgttgcaggcatcgccgcaacgggtgataccgcgttgctcg
cattttggtgtctgttctggttgtgtattgcagcatttggctgaagatgcgcaggttgtg
tcgaagcaacgggtgttgttggaaagtttggaacgtattggtcgtgtcagtccggagcgt
gtgttgccggcgttggccgcggagagctgggggtatcggcgtaaggggcgtttttctgta
cgttgggtggagaaaaaggggaggacgctggttggtttccgggagcatgatccgcgtttt
gttgccgatgtgtcggtctgtcatacagtggttccgcaggtcggtgaaaaaattgcgctt
ttggcaacgttgcttaacagtttggacggtaggcgtgacgtaccgcagattgagtttatt
gccggtgatgctgttgtggcgttaacggtgcgtcatttgcagccgctgagtgaggcggat
cgtttggtgctgattgagtttgggaaggagcatggtattgcaatttttttgcagtcgggt
ggggtggagagtgtgcgtttgttgtggcctgatgaggtgttgttggcatttcggttgaag
ccttgggatgtggagtttgtgttccgtccgctggatttcattcaaatcaatggggggctg
aatgagaagatgattgcgcatgctttggatctgctcggtgctggatttggggagcgtgtg
ctcgatctgttttgtggtttgggtaacttcacgttgccgttggcgcgtactgtggatgag
gtggttggagtggagggtgatattgggctggtggagcgggccagggagaatgcacggcgt
aatggtttgggtaatgctgaattttttgttgctgatttgacccgtgatcaacgcgatgcg
ccgtggatgcgtcagggctttgataagttgttgttggatccgccgcgttccggagcgatt
gaggtactcaagcagttgccgttaaagatgttcgaacgcatcgtttatgtcagttgtcat
cctggatctctggcgcgtgatgctgatttccttgtcaatgaacagggctttgtgttgcgt
gcggttggggcgatggacatgtttccgcatactgcgcacgtggagagtattgctgtattt
gatcgttgctga
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