Xylella fastidiosa Hib4: XFHB_11505
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Entry
XFHB_11505 CDS
T04925
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xfh
Xylella fastidiosa Hib4
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xfh03016
]
XFHB_11505
Enzymes [BR:
xfh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XFHB_11505
Transfer RNA biogenesis [BR:
xfh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XFHB_11505
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ALR07367
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All DBs
Position
2487815..2488903
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AA seq
362 aa
AA seq
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MPHWIQHPDTLATWWDRKPTRIGMDTEFIRERTFWPELALVQIAIEDEILLVDPLVPGMT
DALGLWLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGMGYQKLVA
TVTNVALEKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDC
TRLTENIEQNENERWPHLAIHSAQLLDAPAQYRLLRLLRWRETSARTRNKPRNWILNNEL
ASILARFPPPNLTELRYQLKKFNKSWDPLATQILEALHTPVADEAQAPLATAPSDADKAL
LKQLQKIVAECSYDLGLPEGILASRRHLEALIEQRRWPNSLGQWRRSLLETQLQPLLSMS
DT
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcattggatccagcaccccgacactctcgctacctggtgggatcgaaaaccaacc
cgaatcggtatggataccgagttcatccgagaacgcactttttggccagaattagcgctg
gtacagatcgcaattgaggatgaaatattattggtggacccactggtccccggcatgacc
gacgcgctgggactctggttggccgctccgaatgtcatcaaaatcatgcacagcgccagt
gaggacttaattgcattcaagtatgcctgcggtgtgctaccacggccgctgtttgatacc
caaattggggctgcattgacgggcttgggtggtgggatgggttaccagaagttggtggcc
acggttaccaatgtggcattggaaaaaggcgaaacacgctcagactggatgcaccgacca
ctcacgccagcgcaactagactacgcggctaacgatgtccgctatttatttgcattgcat
gacacgctcacagaacggttagcagaaatgagtcgcagtgcttggttggaagaggactgc
acacgattaaccgagaatatcgaacaaaatgagaacgaacgctggccgcatctggcaata
cattcagcgcaacttcttgacgctccagcacagtaccgcctgctgcgcctattgcgctgg
cgggagacatcagcacgcaccagaaacaaaccacgcaactggatactgaacaacgaactg
gccagcattctggcaaggttccctcctcccaatctgaccgagctgcgataccagcttaaa
aagttcaataaatcctgggacccactcgccactcaaatactggaagcgctacacactcct
gttgccgatgaagcgcaagcgccattggcaactgcacccagcgatgcagacaaagcgttg
ctcaagcaactacagaaaatcgtcgccgaatgtagctatgatctaggtttacctgagggt
atcctggcgtcgcgtcgtcatttagaagctctcatcgaacaacgccgatggccaaactca
ctcggccaatggcgccgctctctgctcgaaacacagttacaaccattattatctatgtca
gatacctaa
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