Xylella fastidiosa Hib4: XFHB_12255
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Entry
XFHB_12255 CDS
T04925
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xfh
Xylella fastidiosa Hib4
Pathway
xfh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XFHB_12255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfh03021
]
XFHB_12255
03400 DNA repair and recombination proteins [BR:
xfh03400
]
XFHB_12255
Enzymes [BR:
xfh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XFHB_12255
Transcription machinery [BR:
xfh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XFHB_12255
DNA repair and recombination proteins [BR:
xfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XFHB_12255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ALR07495
LinkDB
All DBs
Position
complement(2649729..2653952)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIGLASPALIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGSIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDATM
GAEAVYELLRMIDLQSEMARLREEIVVTGSETKLKRLTKRIKLIEAFIESGNRPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLCRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSARSVIIVGPN
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVISEHP
VVLNRAPTLHRQGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSELKRAYDNS
VVELHAKVKVRITEIETDDRGLRNKASLIVDTTVGRALLSEILPEGLPFVLVNTEMTKKN
ISRLINSSYRMLGLKDTVVFADKLMYTGYAYATRAGVSICIDDMLIPIEKKEILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNTDGEIVDQKSMN
SLYIMADSGARGSPQQIRQLAAMRGLMVRPDGSIIETPIKANFREGLSVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLCVVQLDCGTAGGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDDEPIVTRSTLLDEQWVAKLEETGVQSVKVRSPITCESPFGVCALCY
GRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTALSAAAVDNITVKTSGSVK
FTNLKYVEHVNGTLVAVSRSGEISVLDTHGRERERYKLPYGATINVKDMAEVKSGQILAN
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDDLTGLSSREIADLKRRGSQGKDLRPLVR
IVDKKGNDLTIPGTDLSAQYLLPPRSIVNLQDGAPVGIGDVVAKIPQEASKTRDITGGLP
RVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLIIKDADGSEHEELIPKYRQIIVFE
GEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIDENAKLIARNELPAKYNPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGQRYHSQRRYSSVGLTQSE
METLVGRSTSSGTEVTSPSKDAIPLGG
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctactcaatctttttaatcagcagcgccagacattggatttcgatgccatc
aagattggccttgcctcgcctgccttgattagatcttggtcgttcggtgaagtgaagaag
ccggaaacaatcaactatcgcacttttaagcctgagcgtgatggtttgttttgtgctgct
atctttggtcctatcaaggactatgaatgtttatgcggcaaatataagcgcatgaagcat
cgaggggtggtctgtgagaaatgcggtaccgaggtgactttagccaaagtacgccgtgag
cgtatgggttccattgagctagcttcgcctgttgctcatatttggttcttaaaatcgcta
ccttcacgcattggattgatgctggacatgactttgcgtgatatcgagcgtgtcttgtac
ttcgaagcctatgtagtgactgagccgggtctaactcctttagaacggcgtcagctccta
accgaagaacaatatttgcaagcccgtcaagagcatgctgatgacttcgatgctactatg
ggagccgaagctgtatacgaactcttgcgaatgattgacttgcaatcggaaatggctcgt
ttgcgtgaggaaatcgttgtcactggttctgagactaagctgaaacgtttgactaaacgt
attaagttgattgaagcgttcatcgaatctggcaatcgtccggaatggatgattttgacc
gtgttgcctgtactacccccagacctgcggccgctggtgccgttggacggcggtcgcttc
gcaacctctgatcttaatgacctgtaccgtcgagtcattaatcgtaacaatcgtctgtgc
cgcttattggagttaagtgctcctgacatcatcgtgcgcaacgagaagcgcatgttgcaa
gaatcagttgacgcgttgctagacaacggtcgtcgcgggcgtgctattactggtactaat
aagcgtcccttaaaatcgttagcggacatgattaagggtaaacagggccgttttcgccaa
aatttgcttggaaagcgtgtcgattactctgctcgttcagtgattatcgtaggccctaat
cttcggttacaccaatgtggattaccgaaaaaaatggcgcttgagctattcaaacctttt
gtgtttgctaagctgcagcgtcgcggcttggctactacgattaaggcagctaaaaaactg
gttgagcgtgaagaagccgaggtctgggatattcttgaagaggttatttctgagcatcct
gtggtattgaatcgtgcgccaactttacatcgccagggtattcaagcctttgagccagtt
ttaattgaaggtaaagcgattcagttacatccgttggtttgtactgcattcaatgctgat
ttcgatggcgatcagatggccgtgcatgtgcctctttcgctcgaagctcagcttgaagcg
cgtgcgttgatgatgtctaccaacaacatactgtctccagcgaatggtgagccgatcatc
gtaccatcacaggatgttgtacttggcttgtactacatgagccgtgcacttgaaaataag
aagggcgaagggatggtgttcgccaataccagcgagctgaaacgtgcttacgacaatagc
gttgttgaattgcatgctaaggtgaaggttcgtattacagagatagagactgatgatcga
gggctgcgtaacaaggcttctttgattgtagatactacggtaggtcgtgcattattgagt
gagattcttccagaaggtttgccgtttgttcttgtcaatactgaaatgactaaaaagaac
atttcgaggttgattaattcaagttatcgcatgcttggcttgaaggacaccgttgtattt
gcagataaattgatgtatacgggttatgcctatgcgacacgtgccggtgtgtcaatctgt
attgatgacatgctgattcctatcgaaaagaaagaaatattgggtgaagctgagcaagaa
gtgctcgagattcaggagcagtatcaatccggattggttaccgctggcgagcgttataac
aaagtggttgatatttggtcccgtactaatgaacggattgccaaggcaatgatggatact
atcggcactgagaaagtggttaacactgatggtgaaatcgttgatcagaagtcgatgaat
tcgctgtatatcatggctgattctggcgcgcgcggtagcccgcagcagattcgccaatta
gctgctatgcgtggtctaatggtacgtcctgatggctcgatcattgagacacctatcaaa
gctaactttcgtgaaggtttgagtgttcaggaatatttcaactctacgcatggtgctcgt
aaaggtttggctgatacggcattgaagacagcgaactctggttacctgactcgccgtctg
gttgatgtcactcaagatttatgtgttgtacagcttgattgcggcactgctggtggatta
actatgaccccgatcgttgaaggtggagatgttgttgagccacttaaggatcgcgtgtta
ggacgtgttgttgctgaggatgtattcctgcctggtaatgatgatgagcccattgtcact
cgtagcaccttgcttgatgagcaatgggtagctaagttggaagagaccggtgtgcagtca
gtgaaggttcgttctcctatcacatgtgagtctccgtttggcgtatgcgccctatgctat
ggtagggatcttgctcgtggtcatttggttaatatgggtgaagcagtaggtgtcattgct
gctcaatcaatcggtgaaccaggtacgcagttgacgatgcgtaccttccatattggtggt
accgcgttgagtgcagcagcggtagataacattactgtaaaaactagcggttcggtaaaa
tttactaatctaaagtatgttgagcatgtcaatggtactttggtggcagtatctcgttcc
ggagaaatttcggttctagatactcacggccgtgagcgtgaacgctacaagttaccttac
ggtgcgactataaatgtcaaggatatggctgaagttaaatcagggcaaatcttggcaaat
tgggatccccacaatcacccaattgtttctgaagttgcaggttttgtccgttttatcgac
tttgttgatggtgtcactgtcattgagaaaactgatgatctgactggtttatcttcgcgt
gagattgctgatttgaagcgccgtggttcccaaggtaaggatcttcgtcctttggtgcgt
atcgttgataaaaaaggtaacgatctgactattcccggtactgatctttcagctcagtat
ttgttgcctccgcgttcgattgttaatcttcaggatggtgctccagttggcattggtgat
gtggtagctaagattccacaggaggcctccaaaactcgggatatcactggcggtttgcct
cgggtggcggatctgttcgaagcgcgtaggccgaaagatcctgctattttggctgaacgt
tcaggggtgataagttttggtaaagacaccaaaggtaagcagcgattgattattaaagat
gccgatggaagcgagcacgaagagttgattcctaagtaccgtcaaattattgtgttcgag
ggcgagcatgtcaccaagggggagaccattgtggacggtgagccgagtccacaggatatt
ttgcgtttactgggtatcgagccgttagctgcttacttggttaaagaaatacaggatgtg
tatcgtttgcagggtgtgaagatcaatgataagcatattgaagtcattacacgccaaatg
ttgcgcaaagttgagattgttgatcagggaaacagtaagttcctcaatggtgagcaagtt
gaacgtcagcgtgttatcgatgaaaacgcgaagttaattgcgcgcaatgaattaccagca
aagtacaatccagtgttactaggtattactaaggcttctttggcaacggaatcgttcatc
tcggcagcttctttccaagaaacgacccgtgtcttaactgaggctgcggtacgagggacc
agggataatttgcgtggtttgaaggaaaatgtcatcgttggtcgccttatcccggcgggt
actggccagaggtatcatagccagcgtcgctatagttctgttggtcttactcagtctgaa
atggaaaccttggttggtcgcagtacctcatctggtacagaagttacttcgccttccaag
gatgcgattcctcttggggggtaa
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integrated database retrieval system
