Xylella fastidiosa Hib4: XFHB_12520
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Entry
XFHB_12520 CDS
T04925
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xfh
Xylella fastidiosa Hib4
Pathway
xfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFHB_12520 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfh03019
]
XFHB_12520 (rhlB)
Enzymes [BR:
xfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XFHB_12520 (rhlB)
Messenger RNA biogenesis [BR:
xfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XFHB_12520 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
DUF7533
Motif
Other DBs
NCBI-ProteinID:
ALR07536
LinkDB
All DBs
Position
complement(2713049..2714680)
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AA seq
543 aa
AA seq
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MSDKPLTNLNFSSLDLHPALLTGLTRAGFILCTPIQALTLPVALAGRDIAGQAQTGTGKT
LAFLVVVVNRLLSCPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYG
GVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDI
RFILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPA
EEEKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLL
NRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF
ACERYAMSLPDIEAYIEQKIPVAAVTAELLAPLSRPERASNGNGDTVGDISPHSLDVLVA
QEWRRGKPRGSPGERDGRPRVGKGPRSDGGGGRRRTKFRLETERDSSVDGAVTPVFGVST
GIVSAPGKEVGRNLGRRRRSRSMDSGESGHVVATTAQVAVKSGSQPSLLGRIGHRIRSLL
NMF
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataaaccgttgacaaatttaaatttttcttcacttgatctgcatccagcgttg
cttactgggctgacaagagcaggatttatactctgtactccgatccaggcgcttactctt
ccggttgcactggctggtcgtgatattgccggccaagcccaaacgggaaccgggaaaact
ttggcgtttttggtggtggtagttaaccgtttacttagctgtccggggctagttaatcgt
aacccagaagatccgcgtgcgttgattttggcgccaacccgtgagcttgcgattcaaatc
tataacgatgcagtgaaatttggtggcaatcttgggttgcgttttgcgttgatttatggg
ggcgttgattacgataagcagcgcgaaatgttgcgcaaaggtgcggatgtggtcattgcg
acgccggggcgcttgattgattaccttaagcagcacgaggtggtttcattgcgcgtttgt
gagatttgtgttcttgatgaagcagatcggatgtttgacctggggtttatcaaggacatt
cgctttatattgcggcgcttgcccgagcgttgtagccgtcagactttgctgttctcagcc
actctcagtcaccgcgtgttggagttggcctatgagtatatgaatgagccagagaagctg
gtggcggagacggagactgtcactactacgcgggtccgtcaacgtatttatttccctgcc
gaggaggagaaaatcccattgctgttgggtttgctctcgcgtagcgaggggatgcgtact
atggtatttgtcaatacaaaggtgtttgtcgaaggtgttgcgcgcgcactggatgaggct
ggttaccgggtcggtgtgctgtctggagatgtgccacaaaggaagcgagagactttgctt
aatcgtttccagaaagggcaattggaaatactggttgccacagatgtggctgcacgtgga
ttgcacattgatggcgttaattacgtatacaactacgacttaccgtttgatgcagaagat
tacgttcaccgtattggccgcactgcgcgtttgggagctgatggtgatgcgattagtttt
gcctgtgagcgttacgcgatgagtttgccggacattgaggcatatatcgagcagaagatc
ccggttgcagcagtgactgctgagttgctggctccattgtcgcgccctgaacgtgcatcg
aatggtaacggtgatactgttggggatatttccccacattctcttgacgtgctggttgct
caggaatggcgtcggggtaagcccaggggtagccctggagagcgcgatggtcgcccccgt
gtaggtaaagggccccggtcggatgggggaggtgggcgccgccgcactaaatttcgcttg
gagaccgagcgtgattctagtgtggatggggcagtcactcctgtatttggagtgtctacg
gggatagtatctgctccaggtaaagaggtggggcgaaacctcggtcgccgacgtcgtagt
cgttcaatggattctggtgaaagtggccatgttgtcgccactaccgcccaagtggctgtt
aagtcaggtagtcaaccgtcgctcttaggtcgaatagggcaccgtatccgctcgctgtta
aatatgttctaa
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