Xylella fastidiosa MUL0034: P303_12245
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Entry
P303_12245 CDS
T03317
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xfl
Xylella fastidiosa MUL0034
Pathway
xfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P303_12245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfl03019
]
P303_12245
Enzymes [BR:
xfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P303_12245
Messenger RNA biogenesis [BR:
xfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P303_12245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
DUF7533
Motif
Other DBs
NCBI-ProteinID:
AIC14150
LinkDB
All DBs
Position
2486092..2487723
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AA seq
543 aa
AA seq
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MSDKPLTNLNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKT
LAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYG
GVDYDRQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDI
RFILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPA
EEEKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLL
NRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF
ACERYAMSLPDIEAYIEQKIPVAAVTAELLAPLSRPGRASNGNGDTVGDISPHSRDVLVA
QEWRRGKPRGSPGERDGRIRVCKGTRSDGGGGRRRTKFRLETERDSSVDGAVTPVFGVST
GIVSAPGKEVGRNIGLRRRSRSMDSGESGHVVATADQVAAKSGSQPSLLGRIGHRIRSLL
NMF
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataaaccgttgacaaatttaaatttttcttcatttgatctgcatccagcgttg
cttactgggctgacaagagcaggatttacactctgtactccgatccaggcgcttactctt
ccggttgcactggctggtcgtgatattgccggccaagcccaaacgggaaccgggaaaact
ttggcgtttttggtggtggtagttaaccgtttacttagcagtcctgggctagtcaatcgt
aacccagaagatccgcgtgcgttgattttggcgccaacccgtgagcttgcgattcaaatc
tataacgatgcagtgaaatttggtggcaatcttgggttacgttttgcgttgatttatggg
ggcgttgattacgataggcagcgcgaaatgttgcgcaaaggtgcggatgtggtcattgcg
acgccggggcgcttgattgattatcttaagcagcacgaggtggtttcgttgcgcgtttgt
gagatttgcgttcttgatgaagcagatcggatgtttgaccttgggtttatcaaggacatt
cgctttatattgcggcgtttgcccgagcgttgtagccgtcagactttgctgttctcagcc
actctcagtcaccgcgtgttggagttggcctatgagtatatgaatgagccagagaagctg
gtggcggagacggagagtgtcactactacgcgtgtccgtcaacgtatttatttccctgct
gaggaggagaaaatcccattgctcttgggtttgctctcgcgtagcgaggggatgcgtact
atggtgtttgtcaatacaaaggtgttcgtcgaaggtgttgcgcgcgcgcttgatgaggct
ggttaccgggtcggtgtgctgtctggagatgtgccacaaaggaagcgagagactttgctt
aatcgtttccagaaagggcaattggaaatactggttgccacagatgtggctgcacgtgga
ttgcacattgatggcgttaattacgtatacaactacgacctaccgtttgatgcagaagat
tacgttcaccgtattggccgtactgcgcgtttgggagctgatggtgatgcgattagtttt
gcctgtgagcgttacgcgatgagtttgccggacattgaggcatatatcgagcagaagatc
ccggttgcagcagtgactgctgagttgttggctccattgtcgcgtcctggacgtgcatcg
aatggtaacggtgatactgttggagatatttccccacattctcgtgacgtgctggttgct
caggaatggcgtcggggtaagcccaggggtagccctggagagcgcgatggtcgcatccgt
gtatgtaaagggacccggtcggatgggggaggtgggcgccgccgcactaaatttcgcttg
gagaccgagcgtgattccagtgtggatggggcagtcactcctgtatttggagtgtctacg
gggatagtatctgctccaggtaaagaggtggggcgaaacatcggtctccgacgtcgtagt
cgttcaatggattctggtgaaagtggccatgttgtcgccactgccgaccaagtggctgct
aagtcaggtagtcaaccgtcgctcttaggtcgaatagggcaccgtatccgctcgctgtta
aatatgttctaa
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