Xylella fastidiosa M12: Xfasm12_0039
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Entry
Xfasm12_0039 CDS
T00677
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Xfasm12_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_0039
Enzymes [BR:
xfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Xfasm12_0039
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Xfasm12_0039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
SWI2_SNF2
AAA_30
ERCC3_RAD25_C
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACA11087
LinkDB
All DBs
Position
39630..43211
Genome browser
AA seq
1193 aa
AA seq
DB search
MSPFSFPSPLLPRAGQLRAFWRAPVSPTALAWHIACAAEAHRGPLLLVTHDNHSAHQVEV
DLQTLLAHCPGLPVIGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTL
MQQLAPLSYIVGGSFDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYP
MGTDVPLRIELLDEEIDSIRTFDPESQCSLNQVDVVHMLPGREVPLDPAVLERVLVRLRE
RFDLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTAPG
VSNAADTFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAEHAHI
DKAEVLDEQPLPVATKDVSVGQALRTFLADYAGRVLIAATSPGRREVLLELLATADLQPE
VLPDFRSFFLSVPEVSDLGEANRDSGNGVSGSNDAAAFHVIASQGGSLPTFAITVAPLED
GFSLSVPPIAVLTERQLFPERVNLVRRSRRVGREPEAIIRDLGELSEGAPIVHEDHGVGR
YRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQWSK
AKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFEETPDQLAAIETT
LRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDR
FADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVDEEQ
RFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFITP
WDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPERELER
VMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYA
YLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGF
SLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLHIPTLIPEDYLPDVHTRLTLYKRIS
TARDSNALRELNVEMIDRFGVLPETAKHLFAIAELKLQATALGISKLELGENGGRIIFGA
KPIIDPMAVIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAVRGLLAALTP
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccattctcctttccctctccgctgctgccccgtgccgggcagctccgtgcattt
tggcgtgctccggtctctccaacggcgcttgcttggcatatcgcttgtgctgctgaggca
cacaggggaccattgctgttggtcacgcatgacaatcacagtgcgcaccaggttgaggtt
gacctacagactctattggcgcattgcccagggttgccggtcattggtttcccggattgg
gagacgcttccttacgaccaattcagccctgatccgaatattgtcagccagcgtttggcg
acgttgcatcggttgccttcattagcacgcggtattgtcgtcgtgccggtacagacgttg
atgcagcagttggcaccgttgagttacatcgttggtggcagctttgattttaaggtgggg
caacgcttgattctggatgctgagaagcagcggttggagcgggcgggttaccgcaatgtg
ccgcaggtgatggaccccggggattttacggtgcgtggggggctgcttgatgtttatccg
atgggtacggatgtaccgctgcgaatcgaactattggatgaggagattgattcaatccgt
acgttcgatcccgaatcgcagtgttcgttaaatcaggtcgatgtcgttcatatgctgccc
ggccgcgaagtaccgttggatcctgcggtgcttgaacgcgttttggtgcggttgcgtgag
cgtttcgatctggatactcggcgcagtgcgttgtatcaggatttgaaagccgggttagct
ccgtctgggatcgagtactatttgccgcttttttttgagtcggggcgtggtgggaaacac
gcgaccgcgacgctttttgattatttgagtgcagatttattggtgttaactgcaccgggt
gtctctaacgctgccgatacgttctgggggcagacgatgcaacgttatgagcaacgtcgc
cacgatattgagcgcccgttgttaccgccgcaggagctataccagtccccggatgcgttg
cgtgaacgcttgaaccgtttgccgcgcattgaggtttggtcggccgaacatgcgcatatc
gataaagcagaggtattggatgagcagccattgccggtggcgactaaggatgtttccgtt
ggacaggcattgagaactttccttgctgattacgctggccgcgtgttgattgctgctacg
tcgcctggtcgtcgtgaggtgctgcttgaattgctggccaccgccgatctgcaaccggag
gtattgcctgactttaggtcgttttttctctctgtgcccgaagtgagtgatttgggggaa
gccaatcgcgatagtggcaatggcgtgtcaggttcgaatgatgcggctgcttttcacgtc
attgcttcgcagggtgggtccttgccaacgttcgcgatcactgtggctccattggaggat
gggttttctctcagtgtgccgcctattgcggtgcttaccgaacgtcaattgttccctgag
cgggttaatctggtgcgccgcagtcggcgtgttgggcgtgagcctgaggcaattattcgt
gatctgggtgagttgtccgagggtgcccctatcgtgcacgaggaccacggggtcggtcgt
taccgcaaactgatcaccatgaacgtcagtggtatgcctggtgagtttgtggagatcgag
tatgcaaagggggaccgtttatacgttccggttgcccaattgcatctgattagccgctac
tcaggcgcttcgccggagacagcgccgctgcactcgttgggtggtgagcaatggagcaag
gccaagcgcaaggcggccgaaaaggtacgcgatgtggctgcggagttgttggaaattcag
gcgcggcgtcaggcgcgtgcaggcttggctttgcgcattgatcgtacgatgtatgaacct
tttgcagcgggtttcccattcgaagagactcccgatcagcttgcagcgattgagacgacg
ctgcgtgatctgcaatccagtcagccgatggaccgtgtagtgtgtggtgatgttggtttt
ggcaaaacggaggtggcggtgcgtgctgcattcgctgcagccagtgcaggaaaacaggtt
gcggtattggtgccgacgacgttgctagccgaacagcactatcgaaatttccgcgatcgc
tttgccgattatccgattagagtcgaagtgctttcgcgcttcaaaagcactaaagaaatc
aaggccgagttgcagaaggtcagtgaaggcaccatggatgtcattgtcggcacgcatcgg
ttgttgcaaccggacgtcaagtttaaagacttgggtttagtcattgtcgacgaggaacag
cgtttcggggtgcgtcagaaggaggcgctgaagtcgttacgtgcgaatgtgcatttgttg
acgctgacagctacgcccatcccgcgcacgctcaatatggcaatggcggggttgcgtgat
ttgtcgatcattgcgacaccaccgctgaatcggctggcggtgcagacgtttatcactcct
tgggataatgcgctgttgcatgaggctttccagcgtgaactagcgcgtggtggtcagttg
tactttctacataatgatgtggagagtatcggcaggatgcagcgtgatctggcccaactg
gtgccggaagcgcgtattggtattgcccacggccagatgcccgaacgcgagttagagcgc
gtcatgctggatttccagaagcagcacttcaacgtgttgctgtctacgacgattatcgaa
tccggtattgatattcccaacgctaacaccatcatcatcaaccgcgctgaccgctttggt
ttggcgcagttgcaccagttgcgtggccgtgtcggtcgttctcaccatcgcgcctatgct
tatttggtggttcctgaccggcgcagcatgacggcggatgcagagaaacgcttggaggcg
attgcgtcaatggacgagttgggtgcgggctttactttggcgacccatgatctggaaata
cgtggcgctggtgagttgctcggtgaagatcaaagcgggcagatggccgaggtcggtttc
agcttatataccgagttgcttgagcgcgcggtgcgcagcatcaagcaaggtaaattgcca
gaccttgatgcaggtcaggaagaacgtggcgcggaggtggatttgcacatacccacgttg
atcccagaggattatttgcccgatgtgcatacccgtttgacactctacaaacggatttcc
acggcccgtgacagcaatgcactgcgtgagttgaatgtggaaatgattgaccgctttggt
gtgcttccagagactgctaaacatctgttcgcaatcgctgagttgaagttgcaagccact
gcattgggtatttccaagttggaattgggggaaaatggtggccgtatcatatttggagcc
aaacccatcattgatcctatggctgtgatccagctcgtccaaaagcaatccaaactgtat
tcgatggaggggccaagtaaattaaaactcaagttgcctttgccggaaccggccgatcgt
ttcaatgctgtacgagggttgcttgctgcgttgacaccttaa
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