Xylella fastidiosa M12: Xfasm12_0043
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Entry
Xfasm12_0043 CDS
T00677
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03420
Nucleotide excision repair
xfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Xfasm12_0043
03430 Mismatch repair
Xfasm12_0043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_0043
Enzymes [BR:
xfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Xfasm12_0043
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Xfasm12_0043
MMR (mismatch excision repair)
Other MMR factors
Xfasm12_0043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ACA11091
LinkDB
All DBs
Position
complement(46435..48606)
Genome browser
AA seq
723 aa
AA seq
DB search
MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTNK
AAGEIQQRIDLQLRHGKRGMWIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKR
VIQSLGLNDTLFPPKQAMWWINTQKDEGRRPEHIQPESHDDWIETQRRIYTEYQERCNRA
GLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQDTNAIQYAFVRVLANDTGHIF
AVGDDDQAIYGWRGAKVEHVQHFLKDFPNVQTIRLEQNYRSSANILDAANAIIAHNPDRI
GKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQSRAFE
EVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLD
EVRHLARTQGLALWDAAMACTQSTTLTARARNALASFLNLLQQLAVETNQMGLAERIDHM
LQRSELRQHWKKEARGSLDAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYAC
LESGDGQVQAGEEGVQLMTLHSAKGLEFPLVFLVGLENGLFPSARSLDEHDRLEEERRLA
YVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQNLLHEVRPTIQVSHQTPLGAV
QRPAHDERDAAPIKLGVNVMHPTFGCGVVVDYEGSGAHTRVQIKFDDAGTKWLVMAYAKL
SVV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgatcacttaaatcagaaccagcgcgaggccgttgctgcagctcccggccactac
ctgatcctcgccggtgccggatcaggaaaaacccgcgttctcactcatcgcatcgtttgg
ctcaacgaggtaaatggggtacccacccacagcatgatggccgtcaccttcacgaacaag
gccgccggcgaaatacaacaacggattgatctacaactgcgccacggcaaacgcggcatg
tggatcgggaccttccatagcctggcgcatcgcttactgcgcctgcattggaacgacgca
acattacccgaaaacttccaggtcatagacagcgacgatcaattgcgcctcgtcaaacga
gtgatccagtccttgggattgaatgacaccctcttccctcccaaacaggcgatgtggtgg
attaatacacagaaagatgaaggacgccgcccagagcacatccaacccgagtcacacgac
gactggatcgagacgcaacgccgcatctataccgagtatcaggagcgctgcaaccgcgct
ggtttggtcgatttttcggaactgctgctgcgggcacatgaactactacgcgatacacct
gcactactgacacactaccgttcgcgcttccgtgagattctgatcgacgaattccaagat
accaacgccatccagtacgcgtttgtgcgtgtccttgccaatgacactggccacatcttc
gccgtcggcgatgacgatcaagccatctacggctggcgtggtgccaaagttgagcatgta
caacacttcctgaaagattttccaaacgtgcagaccatccgcttggagcaaaattaccgc
tccagcgccaatatccttgacgctgccaacgcaatcattgcccataacccagaccgaatt
ggcaaacgcctctggactgaatccggtgttggtgaatccatcgacctatacgccgcctac
aacgagattgatgaagcccgctacatcgtcgaacgcgcccgccagtgggtacgcgacggc
ggcagctacggcgagatcgcagtgctttaccgtagtaacgcacagtcccgcgcgtttgaa
gaagtgctgcaatccgaacatatcccctaccgtgtttacggcggcatgcgcttcttcgag
cgtgccgaaatcaaggatgccctagcctatctgcgcctgcttgccaatcgtagcgatgat
gctgcgttcgaacgcgttgtaaatacccccgtacgcggcatcggtgagcgcaccttagat
gaagtaagacacctagcacgtacccaaggcttagcactatgggatgcggcaatggcatgt
acccaatcaaccacgctgaccgcgcgcgcgcgtaacgccttggcgagtttcctcaattta
ctgcaacaacttgcggtggaaaccaaccagatgggtttagccgaacgaattgaccatatg
ctgcagcgttcggagttacgccagcactggaagaaagaagcgcgtggttctctggatgcc
gaatcacgtcaagaaaacttagacgaacttgtttccgtcgcttcacgctttgtccttccg
caaaacgacgaagacacacccatcatgaccgaattagacgcgttcctatcctacgcgtgc
ctggaaagtggtgatggtcaagtccaagccggggaagaaggcgtacaactgatgacccta
cactcagccaaaggcttggaatttcccctagtcttcttggtgggcttggaaaatggatta
ttccccagcgcgcgttccctggatgaacacgaccgactagaggaagaacgccgcttagcg
tatgtcggcatcacccgcgcccgtcacaaactcatcctcagctatgcccaagcacggcgt
atccacggtaaagataactacaacgtcccctcacgctttttacgcgagatcccgcagaat
ctattgcatgaagtacgccccaccatccaggtctcacaccagaccccattaggagcagtg
caacgtccagcccatgatgaacgcgacgcagcacctatcaagctcggcgtgaacgtcatg
caccctacatttgggtgcggcgtggttgtcgactacgaaggcagcggcgcgcacacccgc
gtacaaatcaaattcgatgacgccggtacaaaatggttggtcatggcatacgccaaactc
agcgtggtatag
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