Xylella fastidiosa M12: Xfasm12_0220
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Entry
Xfasm12_0220 CDS
T00677
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Xfasm12_0220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfm03019
]
Xfasm12_0220
03009 Ribosome biogenesis [BR:
xfm03009
]
Xfasm12_0220
Enzymes [BR:
xfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Xfasm12_0220
Messenger RNA biogenesis [BR:
xfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Xfasm12_0220
Ribosome biogenesis [BR:
xfm03009
]
Prokaryotic type
rRNA helicases
Xfasm12_0220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_19
CMS1
Cas3-like_C_2
AAA_22
P-loop_SecA
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ACA11248
LinkDB
All DBs
Position
complement(259085..260914)
Genome browser
AA seq
609 aa
AA seq
DB search
MSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQ
QLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKL
PASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKR
PQRNAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVL
DLPAEMPHEILQHLKKVWVSGQQLQMHRIDTTETTAPAREFKSKPGGAGKFPPKPHHNKS
TKPKPPYSG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccatcttctacaccgctgctgtttgcagatctcggcctctccgatgctgtg
atgcaagccgtcacaaaaatcggctacgaaactccgtcgcccatccaggcggcgaccatc
ccagccttgcttgctgggcgcgatgtgctgggccaagcccagaccggcactgggaagact
gccgcattcgcgctaccgttgctcacacgcaccgttctgaaccaggtcaagccgcaagtg
ctcgtactggcacccacccgcgaactggctatccaagttgccgaagcattccagcgctat
gctgcctcgatctctggcttccgtgtcctacccgtgtacggcggccaatcctatggccaa
caactggccgcactgaaacgcggtgtccatgtgatcgtcggtaccccgggccgggtgatt
gatcacctagagcgcggcaccctggatctatcggaattaaaaacgctggtcctcgacgaa
gccgacgaaatgctgcgtatgggtttcattgaggacgttgaagaagtcctacggaagttg
cccgcttcacgccaggtcgctctgttctcggcaaccatgccaccacagatccgccgtatc
gcacaaacctatctacaagatccgattgaagtcaccatcgccaccaaaaccacgaccgca
gccaacatccgccaacgttactggtgggtcagcggcctccacaagctagatgcactcaca
cgcattcttgaggtggaaaccttcgacgcaatgattatcttcgtgcgcaccaaagctgcc
accgaagaattggccgagaaattgcaggcacgtggcctgaccgccgcagcgatcaatggc
gatatgcaacaagcgcaacgcgaacgcaccattcaccaactcaaagatggcaagctggat
atcctcgttgccaccgacgtcgccgcacgtggtttggacgtagaacgtatcagccacgtg
ctgaactacgacatcccttacgacgttgagagctacgtccaccgtatcggacgcactggg
cgtgccggtcgcagcggcgaagcaatcctctttgtgactccgcgcgaaaaaggcatgctg
cgccagattgaacgtgccactcaccaaccgatcgaagccatgcaactgcccagtgtggat
gcagtcaacgacacgcgcgtgaccaaatttttcggacgcatcagcaatgctctggtggtc
ggcgctgaaatcgacttctaccgcaaactgctacaacgtttcgagagcgagcacaatgtc
cctgccattgagatcgctgctgccctggcacgactccttcagggggatagccccttcctg
ctgagtgtcccgacgcgcccccaacgcgagcgcagcgagctggcatccgagcatcatgtc
aaacgcccctcatccttcaagcagacagagcgtccaaacaacactgaacaccccaagcgc
ccccaacgcaacgcacctgcccgcaatgtcccagagttcggtatggagtcttaccgcatc
gaagtcggccgcatgcacggtgtgaagccagccaatatcgtcggcgctatcgccaacgaa
gctggattagagagccgctacattggccggattgacatccgtgacgatcactcggttctg
gatctccccgcagaaatgccacacgagatcctgcaacacctaaaaaaggtctgggtatca
ggacagcaactacaaatgcatcggatcgacacaaccgaaacaaccgcacctgcacgggaa
tttaagtcaaaaccgggtggcgctggcaaattcccgccgaaaccgcatcacaacaaatca
accaaaccaaaaccaccatacagcggttga
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