Xylella fastidiosa M12: Xfasm12_0448
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Entry
Xfasm12_0448 CDS
T00677
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03030
DNA replication
xfm03410
Base excision repair
xfm03420
Nucleotide excision repair
xfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Xfasm12_0448
03410 Base excision repair
Xfasm12_0448
03420 Nucleotide excision repair
Xfasm12_0448
03440 Homologous recombination
Xfasm12_0448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfm03032
]
Xfasm12_0448
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_0448
Enzymes [BR:
xfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Xfasm12_0448
DNA replication proteins [BR:
xfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Xfasm12_0448
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Xfasm12_0448
NER (nucleotide excision repair)
GGR (global genome repair) factors
Xfasm12_0448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ACA11459
LinkDB
All DBs
Position
491483..494254
Genome browser
AA seq
923 aa
AA seq
DB search
MSKLVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKERPDYAAFVIDAPG
KTFRDALDSEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIHGVEADDVIGTLALAAV
ADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGD
SVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDNLRVVLPRLLLNRALITI
KTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALKELDGGSVAVTVAEQEPGRGRDAG
FHVAPDASVAMEINPALSAPGEYETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAV
LIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHV
LRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFS
HVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQI
DAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQP
STNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATG
RLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAF
ESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDY
IALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAP
MQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMA
AAAQLRVPLVVDVGVGHHWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagttttaattgatgggtccagttacctttatcgtgcgtttcacgcattg
ccgccgctcagtaatgcagcaggtgaacctaccggtgcgttgttcggtgtggtcaacatg
ttgcgtactacattgaaggagcgcccggactatgctgctttcgtgattgatgctccaggg
aagacgtttcgcgatgctcttgattccgaatacaaaatgcatcgtccgcctatgcctgat
gatttgcgtatgcaggtggagccgatgtgtgggattgtgcatgcgttaggtatcgatatt
ttgtgtatccatggggtggaggctgatgatgtgatcggcacattagctttagctgccgtt
gctgatgggattgcggtgacaatttctacgggtgataaggacttcgctcagttggtgcgt
ccaggtgtggagttggtcaacacaatgactggtagtcggatggactcggctatggcagtg
atcaataaattcggggttgctccggatcagattattgattttttggcgttgatgggtgat
tcggtggataacgtgcctggtgtggataaatgcgggccgaagacagcagcgaagtggttg
gctgagtatggttcactggatgcggtgattgccaatgcggacaagatcaaggggaaaatt
ggtgacaatctgcgtgttgtgctgccacgacttttgttaaatcgtgcgctgattacaatc
aagactgatgtggtattggagaagcgcccgcaggatttggcgctgcgtgagcgtgatact
gaagcgctgcgtgatttttaccagcggtatggcttcacacaggcattgaaggaactcgat
ggtggtagcgttgcagtcactgtggctgagcaggaacctgggcgtgggcgagatgcgggt
ttccatgttgctcctgatgcatcggtggcaatggagattaatccggcgttgtctgcgccc
ggagagtacgagacgattttcacagttgagcagttgcaggattggattgtgcggttgcgg
gtggcgggtcagtttgctttggacactgaaaccgacagtctggatccaatgcaagcggtg
ctcattggcctgagttttgcgtcagaagtaggatgtgctgcttatttgccatttggtcat
gattaccctggtgcgccggtgcagcttgatcgcgggcaggcgctggcattactgcaaccg
ctgctggaagatgctgcggtgcgcaaggtgggtcagcatggcaaatatgatatgcatgtg
ctgcgtcgttacggtatcgtgctcgctggttatgccgatgacactctattagaaagtttt
gtacttacttccggtcatgcgcgtcacgatatggatacgttggcgaggcgccacctcggt
tacgagacgatgaagtatgtcgatctggtgggtaagggagctaagcagattcctttttcg
catgtgggggttcaagaggccactcagtacgctgctgaggatgcggatatcacgttgcgc
ttgcactgtgtgctggcgcccaagttgttggccgagccaattttggagcgggtctaccgt
gaaatcgaaatgccactggttgcagtgctggagcgcattgaggccaatggtgtgcagatt
gatgcagaggagttgtataagcagagtgctgatttgtcgcggcggatggttattgcgcag
caaaaggcgatggacttggcagggcgtcacttcaacttggattcaccgaaacagttacag
gtgctgttgtttgatgagttgaagttgccagtcgtggtgaagacgcccaaggggcagcca
tcgactaatgaggaggcgttggaggcgattgttgatcagcatgcgttgccgcgtgtcatt
ctggaatatcgcagcttggccaagctgcgcaatacctacactgagaagttgccggagatg
atccatccgcacactgggcgtgtgcataccaattaccatcaggccggtgctgctactggg
cggttgtcttcctcagatcccaatttgcagaatatcccgattcgtacggatgatggtcgc
cgtatccgtcgtgcttttgtggcgccttctgggcgcaagttgattgcttgcgattattcg
cagatcgagttgaggatcatggcgcatctttcaggggatgcggggcttgttgatgcgttt
gagtctggtgtggatgtgcattgtgctatcgctgcggaggtgttcggtcgtggaattgat
gaggtgacgccgaatgagcgtcgtgcggcgaaggcaatcaattttggcttgatctacggg
atgagtgcgtttggcttggcgcgtcagcttggtatcagccgcggtgaggcgcaggattac
attgccttgtatttcgatcgtttttctggggtgcgtgattttatggaaaacacgcgtcag
caggcgcgcgatagagggtatgtagaaacggtgtttggacgccgtctgtatttgaactcc
attgccagcggtaaccagacgcagcgtgccggtgctgagcgtgcagcgatcaatgcgcca
atgcaggggactgcggccgatatcatcaagcgtgccatggttgcagtggatggttggttg
ggagtgggagggcatcgggagcgtgcgctgatgatcttgcaagtacacgatgaattagtg
tttgaggcggatgagggtttcgtgccgacgcttgtacatgaagtgtcggcacgaatggct
gcggcagcgcagttgcgtgtgccgttggttgtcgatgttggcgtaggtcatcactgggat
gaggcgcactga
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