Xylella fastidiosa M12: Xfasm12_1814
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Entry
Xfasm12_1814 CDS
T00677
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Xfasm12_1814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_1814
Enzymes [BR:
xfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Xfasm12_1814
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Xfasm12_1814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
nSTAND_NTPase5
AAA_30
Lambda_tail_I
AAA_25
V_ATPase_I_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACA12703
LinkDB
All DBs
Position
complement(1881544..1885272)
Genome browser
AA seq
1242 aa
AA seq
DB search
MNTPHDPYLTLPLHGVRLIEASAGTGKTFTMATLVTRLVVERGWRIGHILAVTFTEAATQ
ELRTRIRERLILAARLVPQAAELPVPLPSAQPQMSHPTPHPQDAPRITPGVTNSASPEPP
DVVLTLQILRTHLAATDETPHALHSRLQQAADEIDLAAIFTIHGFCTRVLREHALHTGQS
FIPPTLLASDRDLLHELAADIWRQEIADPEAIQDLIHLWPAGAPMLAQDLTDLLYQPHLS
PAPSLAAPVVLPDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLNKKSYKADALNDL
WDWMERWSLAPNAYPEPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSEAVQHYLDALTSI
ETARAQHRLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRSLRQ
QYRMALVDEFQDTDVAQWRIFHHVFGDTEHAHTADLTPALFLIGDPKQAIYGFRGGDVHT
YLAAAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGTHCRDTD
LSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADAQTGRA
LLDGRPVGAGDIAVLVRSHREATLMQQALARAGIPAVAAGKRSLLTTDEANEALALLLAL
LHSADEGRLRTALSTVLVGLTAETIATFDHDSVASRHWQRQALHWRERLHSGGPLGLLTD
LCALHAARLLSLFDGERRLSNYLQLGELLQQVHLRALGLHGLVDWLARRIAEAKNDDETQ
LLRLESDARRVQIVTLHKSKGLEYPLVFLPYVAIGRSHAGPGRYCVVHDAQQGRCLHWCL
DKQAPEWQRAETAWKQEQRAEEARLLYVGLTRAKHALWIATGTFYQTEHTPLWPLLGDPQ
AVPAQPGIVFDTAVPPAILPRLTPEQPHSVPPARTAQRALLSDWWVYSFTQLAHAKAEPA
PDGGRRIAEPLTGGQDEPAWPQDAIQQPLPGSEVPAAPRFTGIRFGVALHEVFERTDFLA
WSTWRANVPVPATERGVLLQALRSSGYVAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDV
PTTERRPEIEFQFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHA
GRWYVLDYKSNRLPDYTPAHLSVAMTDSEYDLQALIYTVALHRWLRFRLRDAYDYARDMG
GIRYLFCRGMDATRPDAAGVYTQSFAPALIEAVDAMFSGACP
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccccccatgacccctatctgaccttgcccctccacggcgtgcgtctgattgaa
gcctccgcgggcactggtaaaaccttcaccatggccaccctcgtcacccgacttgtggtc
gaacgaggctggcgcatcggccacattcttgcagtgaccttcaccgaggccgcgacccaa
gaactacgcacccggatccgcgagcgcctaatactcgccgcccgtctcgtcccgcaggct
gctgaactgccggtgccccttccctcagcacaaccacagatgtcgcatccaacaccccat
ccccaggatgcacctcgcatcactcctggagtgaccaactccgcctcccctgaaccccca
gatgttgtgttgaccctacagatcctgcgtacccaccttgccgctacggatgagacccca
cacgccctgcactcccgtctacaacaggccgccgatgaaatcgacctcgcggcgattttc
accattcatggcttctgcacacgcgtactgcgcgaacatgccttgcataccggacaaagc
ttcattccgcctaccttactggccagtgaccgcgatttactacacgaactggccgccgac
atatggcgtcaagaaattgctgatcccgaggccatccaagacctcatccacctctggccc
gcaggcgcaccgatgctggctcaggacctgacagacctgctctaccaaccgcacttatct
cccgcgccatcgctggcagcaccagtggtgctgcctgatgctgcccttgccgtcgctgag
accacattgcgccacctctggcagaccgagggcgcggcactgcgcagcgcactgcacacc
gccttagaagagggcgtcctcaacaagaaaagctacaaagccgatgcactgaacgatctc
tgggattggatggaacgctggagcctcgcacccaacgcctatccagagccacaccccaaa
ctgcaaacattgaccgttgcggccttgcaagccggcaccaataaacagggtgccggacgc
agcccaaactcccccgtgagcgaagccgtacagcattacctggacgcactgacgagcatc
gaaacagcacgcgcccagcatcgcttacgtcgcctgcatcgcttgcgtgccgcagcccgc
ctccgcctcaccgcactcaaacgccagcgtcgcgtacagacctacgatgatttgattcaa
cgtgtcgcccaggcactggatgggccgcatcgcctcgccctagtgcggtccctgcgccaa
cagtaccgcatggccctcgtcgatgaattccaagataccgacgtggcccaatggcgcatc
tttcatcacgtctttggtgataccgagcacgcacacaccgccgacctcacacccgcattg
tttttgattggcgaccccaaacaggccatctatggctttcgtggtggcgacgtacacacc
tacctggccgccgccgcccgtgccgaacgcgcgcccccgctggagcgtaacttccgctcc
cgtcccctattactgcgtgccattgaagcactgtatacccaagccggcgatgcagccttc
ctcaccccaggcattgccttccaccccgtacagccaggcacccactgccgcgatacagac
ctcagcaacgccggagttcccgcacccgcgttacaagtgtggcaagccccaccgccattg
gacagcaccgccaagggcaaacccaaaccctggaatgccgatgccgcgcgcgccctgtgc
accgatgcctgcgtccatgccattcaccaatggcttgccgacgcacagaccgggcgcgcc
ctgctggatggccgccccgtgggtgccggcgacatcgccgtattggtgcgcagccaccgt
gaagccacattgatgcagcaggccctagcgcgtgcgggcattcctgccgttgctgctggc
aaacgcagcctattgaccaccgacgaagccaatgaagccctggcactattgctggcactg
cttcacagcgctgacgaaggccgtttgcgtaccgcactgtccaccgtcctcgtgggcctt
accgcagagacaatcgccacatttgaccatgacagcgttgcctcccgtcactggcagcgc
caggcgttgcactggcgcgaacgcttacacagtggcggccccttggggttactgaccgac
ctatgcgcgctacatgccgcacgcttgctcagcctcttcgacggtgagcgccgtttgagc
aactacctacaactgggggaactactccagcaagtccacctgcgcgccctgggcttacat
ggcttggttgattggttggcacggcggattgctgaagccaagaacgatgacgaaacacag
ctattgcgtttggaatcagatgcgcgccgcgtgcagatagtcaccctgcataaaagcaaa
ggcctggaatacccactggtattcctgccttacgttgcgattggccgttcccatgccggc
ccaggccgttattgcgtcgtacacgatgcgcagcaagggcgctgcctgcattggtgcctt
gataaacaagcaccagagtggcaacgcgctgaaacagcgtggaaacaggagcagcgcgct
gaagaagcacgcctactctacgttggcctgacccgtgccaaacatgcactgtggatcgct
accggcaccttctatcagacggaacacacccccttatggccactgctgggtgatccccag
gcagtgccggcgcagccgggcatcgtctttgacacagctgtaccaccggcaattttgccc
cgtttgaccccagaacagccgcacagcgtcccccccgcacggaccgcacagcgtgccctg
ctttcggattggtgggtgtacagctttacccaattggcgcatgccaaagcggagcctgct
cctgatgggggtcgccgtattgccgagccactcaccggagggcaggacgaaccagcctgg
ccacaggatgccatccaacagcccctacctgggagcgaagtgcccgccgccccccgtttt
accggcatccgttttggtgtggcactgcatgaagtgttcgagcgtaccgacttcctagcc
tggagcacttggcgtgccaatgtccctgtgcctgcgacggaacgtggcgtgttgcttcaa
gccctgcgtagcagcggctacgtggctgaagacgtggaggccggtgtcgccttgctaacc
ccattggtgggccataccttgaccagtgtccttcccgagggcgtgcgtttgtgcgatgtg
ccgacaaccgagcggcgaccggagattgaattccaatttgtcatccaggccacggcggtg
gatgccttgcttgctttgctccatgaccacggcttgctacagcagcgtcagagcttcggc
atgcggcgtcgcttggaaggactgatgaccggcatgatcgacctcatttatcgccacgcc
ggacggtggtacgtcctggattacaaaagcaatcgcctgccggattacacgccagcgcat
ctttctgtggcgatgactgacagtgaatatgacctgcaggcgctgatctacaccgtggcc
ctgcatcgctggttgcgtttccgtttgcgtgatgcgtacgactacgcacgtgatatggga
ggcatccgttacctgttctgccgcggtatggacgcgacgcgtcccgatgcagcaggcgtg
tatacgcaatcctttgctcctgccttgattgaggcagtcgatgcgatgttcagtggagcc
tgcccatga
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