Xylella fastidiosa M12: Xfasm12_1815
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Entry
Xfasm12_1815 CDS
T00677
Name
(GenBank) exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Xfasm12_1815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_1815
Enzymes [BR:
xfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Xfasm12_1815
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Xfasm12_1815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ACA12704
LinkDB
All DBs
Position
complement(1885269..1888634)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSRMIVTTDFRLYHSNALDVLAGLLAETLRSPVPGQSLLVPDTILIPQAAMRRWLQATLA
TTHGVVANLEFLTPGEFVARALDANLGAVPNALDTAVLHWRLYAALCDPALLTEPALAEL
HAYLADGDLFKPWTLAEALSAAFEKYQAWRCDWLLRWEAGADPDDPQAILWRHSVNGATH
RARRIHDYLNRYGSGTAPPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFYLPTPT
KEYWGDAQPFTQRLHQPTDCVTQTGENRLLHAWGAAGRDFMTVLGSYEVVHPSGEITAYD
DPEQRPGTTLDEGGLRDSLLQRLHADLFHNRSAPVPAPLPAPRLEDPSLQFHACHTRLRE
LQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHSDPLPY
TLADASPLIDEPLAEVFLRLLDLPVSRFGLHEILDLLASLPMATLAGFDTQTLEILRSWL
TAAGARWGLDAAHRAEHQAPADDAYTWNFALDRLLLGHASGADADIAGVAAWSDLEGSML
TALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTAPSGIQRPLERLRR
LIDTFATDATRAGVALPVPAEVVRMHFAALLADTDTRAPLLTGGISIGRMVPMRLLPFRV
ICLLGMNDGDFPRRDPAAGLNRLTAELGNAQRRPGDRSRRDDDCLLLLQLFSAAQDVFYV
SYLGADPHDGSLREPSPLLTELLSTAATYHADPSTAAKTLLLRHSLQPFSPTAFGADGDP
RRFSYHPLWQAAAASIEGQRHPLDPWCPRRLPALPDPEPALPLHSLRRFFSAPAEQFLQQ
RLGLRLPELPQTTDECDPLWLPSHGLERHRLDTLIFASLLHETDDALYPQLRARALLPSG
PLGQQQLQERIEHLRPYAQAFAHWRGTALPQSQCLEVMIDGIRLHAHIQDLYPHGIARLR
LGTPNGPAVLRHGLDWLLASAAGHPWPLVRFEDAGVAGLGPHLQPSLPSSQAQTALTLLL
RLRTAGLCQPLPFAPYSAWEYYTQRDTPERALQTARARWRGNDHQWGESNHAAIQLALRN
HDPFATPQTAAHFAQLATLIFDLLTTGQADPEPLTWLQLHP
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatgatagtcaccactgactttcgcctataccactccaatgcactcgacgtt
ctggcgggattgctggccgaaacgttgcggtccccggtgccgggccagtcgttgttggtc
ccagacacaatattgattccacaagcggcaatgcggcgttggttgcaagccacgttggcc
accacgcatggtgtcgtggccaatctggaatttttgactccgggcgagttcgttgcccgt
gcattggatgccaatcttggtgccgtgccgaacgctttggatacagccgtgttgcattgg
cgactatatgcagcgttgtgcgatccagcattactgacggaaccagcccttgctgaatta
catgcttacctggcagatggcgacctcttcaaaccttggacattggccgaagcactgagt
gcggcattcgaaaaataccaggcttggcgttgcgactggttgctacgttgggaggcgggc
gcagatccggacgatccacaggccatcctatggcggcatagtgtcaacggtgccacgcac
cgcgcacgccgcatccacgactacctgaaccgttatgggtcagggacagccccccccccc
caaggactgccagcgcgactctttattttcgccaccctcaacatctctccagatgtatta
cgtgtcctggcgacccaggcacaggttggcacactgcacttttacctgccgaccccgacc
aaagaatattggggtgatgcgcaacccttcacgcaacgcttgcatcagcccaccgactgc
gtcacccagaccggagaaaaccgcctactccatgcctggggtgctgccgggcgtgatttc
atgactgtgttggggagctacgaagtcgtccatccctccggcgaaatcaccgcatacgat
gatccggaacaacgtccaggcaccacactggatgaaggcggcctgcgcgatagcctattg
cagcgcctgcatgcggatctattccataaccgttcggcacctgtccccgcccccttgccc
gcaccgcgtctggaagatcccagtctccagtttcacgcctgtcatacccgactgcgtgaa
ctccaggtccttcatgaccggctccgtgccttgctggaacctaactcaccggagggacag
cgttttaaccctcccttacaaccgcgtgagattgccgtattggcaccggacatcgacctc
tacatcccctatctagaagccgtgttcggtggacacgcccatagcgaccccttgccatac
acactggctgatgccagcccactgattgatgaaccgctggctgaagtcttcttgcgtctc
ctcgacttgcccgtatcccgctttggcctgcacgaaatattggacctcctggccagcctg
ccgatggccacccttgctggctttgacacacagaccttagagatcctgcggagctggctg
accgccgccggcgcacgctggggattggatgctgcccaccgtgccgaacaccaagccccg
gctgacgacgcctacacctggaactttgcactggaccgcctcctcctgggtcacgccagc
ggcgcagatgccgatattgctggcgtcgctgcttggtcggatctggaaggcagcatgctg
accgcattggacaccctgatccgattactgcgcgtcctcgccaatacacgacaacgcctg
agtgaggccctattaccgacacagtggcgagaacgcttactgagcctgcttgatgcactc
ctgcctgacatccccaccgcaccatccggtatccagcgtcccttagaacgcttacgcaga
ctgatcgacaccttcgccaccgatgccacacgcgccggagtggccttacccgtgccagcc
gaagtcgtgcgtatgcactttgccgctttactagccgacaccgatacccgcgccccactg
ctcacaggtggcatcagtattggccgcatggttcccatgcgactgctccccttccgtgtc
atctgtttgttaggcatgaacgacggcgacttcccgcgccgcgatcctgcggctggcctc
aatcgcctcaccgccgaacttggcaacgcacagcgtcgccctggtgatcgctcccgacgt
gatgacgactgcctcctacttctacagctattcagcgccgcccaagacgtcttctacgtc
agctaccttggcgctgatccccacgacggcagcctacgcgaaccctcaccgctgctcaca
gaactacttagcaccgcagccacctaccatgccgaccccagtacagccgccaaaacactg
ctactgcggcattcattacagccattctcccccaccgcctttggcgccgacggcgaccca
cgccgattcagctaccaccccttatggcaggccgccgccgcgagtattgaaggacagcgc
caccctctggacccctggtgtccccgccgactcccagcccttccagaccccgaacccgcc
ctgccactgcacagcctgcggcgcttctttagcgcccctgcagaacagttcctacaacag
cgcctgggcctacgcctgcccgaactccctcagaccaccgatgaatgcgaccccctctgg
cttcccagtcacggcctagaacgccatcgactcgacaccctgatatttgcctccctactc
catgagactgacgacgccctctacccacaactacgcgcccgcgcattactcccctcaggt
cccttaggccaacagcaactccaagaacgcattgaacacctgcgcccctatgcccaagca
tttgcacactggcgcggtaccgccctcccacagtcccagtgccttgaagtaatgatcgac
ggcatccgtctccacgcacacattcaggacctctacccccacggaatcgcccgcctgcgc
ctgggcacccctaacggccccgcagtactgcgccacggattagattggctgctggccagc
gccgccggccacccctggcccctggtccgctttgaagatgcaggcgttgcgggcctaggt
ccccatctacagccatccttgcccagttcccaagcacagaccgcactgaccctactactc
cgcttgcgcacggctggcctgtgccagcccctaccctttgccccctacagcgcctgggag
tactacacccagcgcgacacccccgaacgtgccttgcagaccgcccgcgcccgctggcgt
ggtaacgaccaccaatggggcgaaagcaaccatgcagcgatccaattagcactgcgtaac
cacgatccctttgccaccccgcagaccgctgcccactttgcacagctcgcaacactgata
tttgacctactcaccaccggtcaggccgacccagaacccttgacctggctgcaactgcac
ccatga
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