Xylella fastidiosa M12: Xfasm12_2195
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Entry
Xfasm12_2195 CDS
T00677
Name
(GenBank) DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Xfasm12_2195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfm03021
]
Xfasm12_2195
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_2195
Enzymes [BR:
xfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Xfasm12_2195
Transcription machinery [BR:
xfm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Xfasm12_2195
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Xfasm12_2195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACA13048
UniProt:
B0U5X6
LinkDB
All DBs
Position
complement(2310288..2314523)
Genome browser
AA seq
1411 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIGLASPALIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGCIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASM
GAEAVYELLRMIDLQSEMARLREEIVVTGSETKLKRLTKRIKLIEAFIESGNRPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLCRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSARSVIIVGPN
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKGAKKLVEREEAEVWDILEEVIFEHP
VVLNRAPTLHRQGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSELKRAYDNS
VVELHAKVKVRITEIETDDQGLRNKASSIVDTTVGRALLSEILPEGLPFVLVNTEMTKKN
ISRLINSSYRMLGLKETVVFADKLMYTGYAYATRAGVSICIDDMLIPLEKKEILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNTDGEIVDQKSMN
SLYIMADSGARGSPQQIRQLAAMRGLMVRPDGSIIETPIKANFREGLSVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLCVVQLDCGTAGGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVLLPGNDDEPIVTRSTLLDEQWVAKLEEAGVQSVKVRSPITCESPFGVCALCY
GRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTALSAAAIDNIAVKTSGSVK
FTNLKYVEHANGTLVAVSRSGEISVLDTHGRERERYKLPYGATINVKDMAEVKSGQILAN
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDDLTGLSSREIADLKRRGSQGKDLRPLVR
IVDKKGNDLTIPGTDLSAQYLLPPRSIVNLQDGAPVGIGDVVAKIPQEASKTRDITGGLP
RVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLIIKDADGSEHEELIPKYRQIIVFE
GEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIDENAKLIARNELPAKYNPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGQTYHSQRRYSSVGLTESE
METLVGRSTSSGTEITSPSKDAIPLGSKVGF
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctactcaatctttttaatcagcagcgccagacattggatttcgatgccatc
aagattggccttgcctcgcctgccttgattagatcttggtcgttcggtgaagtgaagaag
ccggaaacaatcaactatcgcacttttaagcctgagcgtgatggtttgttttgtgctgct
atctttggtcctatcaaggactatgaatgtttatgcggcaaatataagcgcatgaagcat
cgaggggtggtctgtgagaaatgcggtaccgaggtgactttagccaaagtacgccgtgag
cgtatgggttgcattgagctagcttcgcctgttgctcatatttggttcttaaaatcgcta
ccttcacgcattggattgatgctggacatgactttacgtgatatcgagcgtgtcttgtac
ttcgaagcctatgtagtgactgagccgggtctaactcctttagaacggcgtcagctccta
accgaagaacaatatttgcaagcccgtcaagaacatgctgatgacttcgatgcttctatg
ggagccgaagctgtatacgaactcttgcgaatgattgacttgcaatcggaaatggctcgt
ttgcgtgaggaaatcgttgtcactggttctgagactaagctgaaacgtttgactaaacgt
attaagctgattgaagcgtttatcgaatctggcaatcgtccggaatggatgattttgacc
gtgttgcctgtactacccccagacctgcgtccgctggtgccgttggacggcggtcgcttc
gcaacctctgatcttaatgacctgtaccgtcgagtcattaatcgtaacaatcgtctgtgc
cgcttattggagttaagtgctcctgacatcatcgtgcgcaacgagaagcgcatgttgcaa
gaatcagtcgacgcgttgctagacaacggtcgtcgcgggcgtgctattactggtactaat
aagcgtcccttaaaatcgttagcggacatgattaaggggaaacagggccgttttcgccaa
aatttgcttggaaagcgtgtcgattactctgctcgttcagtgattattgtaggccctaat
cttcggttacaccaatgtggattaccgaaaaaaatggcgcttgagctattcaaacctttt
gtgtttgctaagctgcagcgtcgcggcttggctactacgattaagggagctaaaaaactg
gttgagcgtgaagaagccgaggtctgggatattcttgaagaggttatttttgagcatcct
gtggtattgaatcgtgcgccaactttacatcgccagggtattcaagcctttgagccagtt
ttaattgaaggtaaagcgattcagttacatccgttagtttgtactgcattcaatgcagat
ttcgatggcgatcagatggccgtgcatgtgcctctttcgctcgaagctcagcttgaagcg
cgtgcgttgatgatgtctaccaacaacatactgtctccagcgaatggtgagccgatcatc
gtaccatcacaggatgttgtacttggcttgtactacatgagccgtgcacttgaaaataag
aagggcgaagggatggtgttcgccaataccagcgagctgaaacgtgcctacgacaatagc
gttgttgaattgcatgctaaggtgaaggttcgtattacagagatagagactgatgatcaa
gggctgcgtaacaaggcttcttcgattgtagatactacggtaggtcgtgcattattgagt
gagattcttccagaaggtttgccgtttgttcttgtcaataccgaaatgactaaaaagaac
atttcgaggttgattaattcaagttatcgcatgcttggcttgaaggaaaccgttgtattt
gcagataaattgatgtacacgggttatgcctatgcgacacgtgccggtgtgtcaatctgt
attgatgacatgctgattcctctcgaaaagaaagaaatattgggtgaagctgagcaagaa
gtgctcgagattcaggagcagtatcaatccggattggttaccgctggcgagcgttataac
aaagtggttgatatttggtcccgtactaatgaacggattgccaaggcaatgatggatact
atcggcactgagaaagtggttaacaccgatggtgaaatcgttgatcagaagtcgatgaat
tcgctgtatatcatggctgattctggcgcgcgcggtagcccgcagcagattcgccaatta
gctgctatgcgtggtctaatggtacgtcctgatggctcgatcattgagacacctatcaaa
gctaactttcgtgaaggtttgagtgttcaggaatatttcaactctacgcatggtgctcgt
aaaggtttggctgatacggcattgaagacagcgaactctggttacctgactcgccgtttg
gttgatgtcactcaagatttatgtgttgtacagcttgattgcggcactgctggtggatta
actatgaccccgatcgttgaaggtggagatgttgttgagccacttaaggatcgcgtgtta
ggacgtgttgttgctgaggatgtattgctgcctggtaatgatgatgagcccattgtaact
cgtagcaccttgcttgatgagcaatgggtagctaagttggaagaggccggtgtgcagtca
gtgaaggttcgttctcctatcacatgtgagtctccgtttggcgtatgcgccctatgctat
ggtagggatcttgctcgtggtcatttggttaatatgggtgaagcagtaggtgtcattgct
gctcaatcaatcggtgaaccaggtacgcagttgacgatgcgtaccttccatattggtggt
accgcgttgagtgcagcagcgatagataacattgctgtaaaaactagcggttcggtaaaa
tttactaatctaaagtatgttgagcatgccaatggtactttggttgcagtatctcgttcc
ggagaaatttcggttctagatactcacggccgtgagcgtgaacgctacaagttaccttac
ggtgcgactataaatgtcaaggatatggctgaagtcaaatcagggcaaatcttggcaaat
tgggatccccacaatcacccaattgtttctgaagttgcaggttttgtccgttttatcgac
tttgttgatggtgtcactgtcattgagaaaactgatgatctgactggtttatcttcgcgt
gagattgctgatctgaagcgccgtggttcccaaggtaaggatcttcgtcctttggtgcgt
atcgttgataaaaaaggtaacgatctgactattcccggtactgatctttcagctcagtat
ttgttgcctccgcgttcgattgttaatcttcaggatggtgctccagttggcatcggtgat
gtggtggctaagattccacaggaggcctccaaaactcgcgatatcactggcggtttgcct
cgggtggcggatctgttcgaagcgcgtaggccgaaagatcctgctattttggctgagcgt
tcaggggtgataagttttggtaaagacaccaaaggtaagcagcgattgattattaaagat
gccgatggaagcgagcacgaagagttgattcctaagtaccgtcaaatcattgtgttcgag
ggcgagcatgtcaccaagggggagaccattgtggacggtgagccgagtccacaggatatt
ttgcgtttactgggtatcgagccgttagctgcttacttggttaaagaaatacaggatgtg
tatcgtttgcagggtgtgaagatcaatgataagcatattgaagtcattacacgccaaatg
ttgcgcaaagttgagattgttgatcagggaaacagtaagttcctcaatggtgagcaagtt
gaacgtcagcgtgttatcgatgaaaacgcgaagttaattgcgcgcaatgaattaccagca
aagtacaatccagtgttactaggtattactaaggcttctttggcaacggaatcgttcatc
tcggcagcttctttccaagaaacgacccgtgtcttaactgaggctgcggtacgagggacc
agggataatttgcgtggtttgaaggaaaatgtcatcgttggtcgccttattccggctggt
actggccagacgtatcatagccagcgtcgctatagttctgttggtcttactgagtctgaa
atggaaaccttggttggtcgcagtacctcatctggtacagaaattacttcgccttccaag
gatgcgattcctcttgggagtaaggtgggtttttga
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