Xylella fastidiosa M12: Xfasm12_2245
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Entry
Xfasm12_2245 CDS
T00677
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Xfasm12_2245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfm03019
]
Xfasm12_2245
Enzymes [BR:
xfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Xfasm12_2245
Messenger RNA biogenesis [BR:
xfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Xfasm12_2245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACA13096
LinkDB
All DBs
Position
complement(2373736..2375370)
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AA seq
544 aa
AA seq
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MMSDKPLTNLNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGK
TLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIY
GGVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKD
IRFILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFP
AEEEKIPLLLGLLSRSEGMRTIVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETL
LNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAIS
FACERYAMSLPDIEAYIEQKIPVAAVTAELLAPLSRPERAWNGNGDTVGDISSHSRDVLV
AQEWRRGKPRGSPGERDGRTRVGKGPRSDGGGGRRRTKFRLETERDSSVDGAVTPVFGVS
TGIVSAPGKEVGRNLGRRRRSRSMDSGESGHVVATTAQVAAKSGSQPSLLGRIGHRIRSL
LNMF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgataaaccgttgacaaatttaaatttttcttcatttgatctgcatccagcg
ttgcttactgggctgacaagagcaggatttacactctgtactccgatccaggcgcttact
cttccggttgcactggctggtagtgatattgccggccaagcccaaacgggaaccgggaaa
actttggcgtttttggtggtggtagttaaccgtttacttagccgtccggggctagttaat
cgtaacccagaagatccgcgtgcgttgattttggcgccaacccgtgagcttgcgattcaa
atctataacgatgcagtgaaatttggtggcaatcttgggttgcgttttgcgttgatttat
gggggcgttgattacgataagcagcgcgaaatgttgcgcaaaggtgcggatgtggtcatt
gcgacgccggggcgcttgattgattaccttaagcagcacgaggtggtttcgttgcgcgtt
tgtgagatttgcgttcttgatgaagcagatcggatgtttgacctggggtttatcaaggac
attcgctttatattgcggcgcttgcccgagcgttgtagccgtcagactttgctgttctca
gccactctcagtcaccgcgtgttggagttggcctatgagtatatgaatgagccagagaag
ctggtggcggaaacggagagtgtcactactacgcgggtccgtcaacgtatttatttccct
gccgaggaggagaaaatcccattgctgttgggtttgctctcgcgtagcgaggggatgcgt
actattgtatttgtcaatacaaaggtgttcgtcgaaggtgttgcgcgcgcgctggatgag
gctggttaccgggtcggtgtgctgtctggagatgtgccacaaaggaagcgagagactttg
cttaatcgtttccagaaagggcaattggaaatactggttgccacagatgtggctgcacgt
ggattgcacattgatggcgttaattacgtatacaactacgacctaccgtttgatgcagaa
gattacgttcaccgtattggccgcactgcgcgtttgggagctgatggtgatgcgattagt
tttgcctgtgagcgttacgcgatgagtttgccggacattgaggcatatatcgagcagaag
atcccggttgcagcagtgactgctgagttgttggctccattgtcgcgtcctgaacgtgca
tggaatggtaacggtgatactgttggagatatttcctcacattctcgtgacgtgttggtt
gctcaggaatggcgtcggggtaagcccaggggtagccctggagagcgcgatggtcgcacc
cgtgtaggtaaagggccccggtcggatgggggaggtgggcgccgccgcactaaatttcgc
ttggagaccgagcgtgattccagtgtggatggggcagtcactcctgtatttggagtgtct
acggggatagtatctgctccaggtaaagaggtggggcgaaacctcggtcgccgacgtcgt
agtcgttcaatggattctggtgaaagtggccatgttgtcgccactaccgcccaagtggct
gctaagtcaggtagccaaccgtcgctcttaggtcgaatagggcaccgtatccgctcgctg
ttaaatatgttctaa
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