Xylella fastidiosa M23: XfasM23_0126
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Entry
XfasM23_0126 CDS
T00692
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xfn
Xylella fastidiosa M23
Pathway
xfn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XfasM23_0126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfn03400
]
XfasM23_0126
Enzymes [BR:
xfn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
XfasM23_0126
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XfasM23_0126
DNA repair and recombination proteins [BR:
xfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XfasM23_0126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ACB91583
UniProt:
B2I676
LinkDB
All DBs
Position
176297..177112
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AA seq
271 aa
AA seq
DB search
MPELPEVETTLRGLLPYLTNQLIYSLTLRRRTLRWDIPSHIESRLPGHRITTVCRRAKYL
LIDTNAGGSLIIHLGMSGTLRLLAPETPLRPHDHVDIMLNNRRVLRFNDPRRFGCLLWQE
DGQIHPLLQRLGCEPLSDSFNGDYLYQCSRARNVSVKTFLMDQRIVVGVGNIYAAESLFR
AGISPLCEADKISLQRYRRLAEVVKDILLYAINRGGTTLRDFLSPDGRPGYFKQELFVYG
RQQQPCKQCGSLLRQTTIRQRTTVWCGHCQG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactcccagaagtcgaaaccacattgcgtggactgttgccctatttgaccaat
caactgatctattctcttaccctgcgtaggcgtaccttgcgctgggatatcccttcccat
atcgaaagtcgtctcccaggccatcgcatcactactgtgtgtcgtcgggccaaatacttg
ctgatcgatactaatgcagggggaagtctcatcatccaccttggcatgtccggtactctg
cgcttactggcgccagaaacgcctctacgcccacacgatcatgtggacattatgttgaat
aaccgtcgtgtgctacggttcaatgaccctcgccgcttcggatgcttgctctggcaagaa
gatggacaaatccaccctctcctacagcgcctcggctgcgaaccactctcagatagtttt
aatggtgattatctttatcagtgcagccgtgctcgcaatgtgtccgtgaaaacgtttctc
atggaccaacgcattgtggtcggtgtcggtaatatctatgctgctgaaagtttgttccgt
gccggtatcagccctctatgcgaggctgacaaaatatccctccaacgctatcggcgcttg
gctgaagtggtcaaggatatcctcctatatgccatcaaccgtggaggaactaccttgcgg
gatttcctcagtcccgatggacgccccggctacttcaagcaggaattgtttgtctacggt
cgtcagcaacagccttgtaagcagtgtggaagcctcctgcgtcaaaccactatcagacag
cgaactactgtctggtgcggccactgccaaggttga
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