Xylella fastidiosa M23: XfasM23_0145
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Entry
XfasM23_0145 CDS
T00692
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xfn
Xylella fastidiosa M23
Pathway
xfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XfasM23_0145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfn03019
]
XfasM23_0145
Enzymes [BR:
xfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XfasM23_0145
Messenger RNA biogenesis [BR:
xfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XfasM23_0145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACB91602
UniProt:
B2I6R0
LinkDB
All DBs
Position
200462..201802
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AA seq
446 aa
AA seq
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MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVL
QRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDV
LRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQN
RQTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLL
AQDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLV
ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQI
VRLLDRDMDIRDVPDFEPQVPIRWGNSAPGKSKQPAGQHPPRKSQHRRAFGKASVHTTPA
LKKQSGVQHSNGSRNRDGMLPVHQRG
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgaaactttgggattgttgccttccttacttcgtgctcttagcgagcaaggt
tacgaaataccgaccccaattcagcagcaggcgattccattggcattagctggccacgat
ttgcttgctgccgcgcaaacagggacaggtaagacggctgcgttcggcttgcctgtattg
caacgattgatggccgcttcatctaatgttggtgccggtaagccgcgtgctttggtgctg
acaccgacccgtgagctggcgactcaggtccacgacagcctacgtggttacgctaagtat
caacgtgtatcaagtgcggtgatttatggtggtgtggggatggggaatcagttggatgtg
ctgcgccgtggcgtagatttgttgattgcctgcccgggtcgtttgattgatcatattgaa
cgtcgcagtgtggatttgtcaggcgtcgggattttggtattagatgaggctgatcgcatg
cttgacatgggtttcctcccctcaattaaacgtatcctcggcaaactaccgcggcagaat
cgccaaactctgctgttctctgcgacatttgctgagccgattaaacagttggcgttagag
tttatgtgccgcccacgcgaggtgatggtggcgtcgcataacaccgttgctgagaccatt
acgcatcgtgtgcatcctgtcgatgttagccgcaagcgtgaattgttgttgtatctattg
gctcaagatagcagggagcagacactggtgttcgtgcggaccaagcatggcagtgacaag
cttgctacgttcttggagaaatacggaatcaagacagcggcgattcacggtaataagact
cagggccagcgtctgcgtgcattaaacagtttcaaagcagggcgagttaccgtgctggtg
gccactgacattgctgcgcgcggaattgatattgaccaattgccaaaagtgatcaattac
gatttgcctatggtggctgaggattatgtgcatcgcatcgggcgtactggacgcaatggt
gtgcagggagaggcaatttcattagtcactcaggaggatgctaagttattgcgtcagatc
gtgcgtttgcttgatcgtgacatggatattcgcgatgtgccggatttcgaacctcaagtc
ccgatccgttggggtaacagtgctccgggaaagagtaagcagcctgctggacagcaccca
ccacgtaagagtcaacatcggcgagcattcggcaaagcatctgtgcatacgacgcctgct
ttaaaaaaacaatcaggtgtacaacatagcaatgggtcccgtaatcgtgatggaatgctc
ccggttcatcagcgtggttga
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