Xylella fastidiosa M23: XfasM23_2009
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Entry
XfasM23_2009 CDS
T00692
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xfn
Xylella fastidiosa M23
Brite
KEGG Orthology (KO) [BR:
xfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xfn03016
]
XfasM23_2009
Enzymes [BR:
xfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XfasM23_2009
Transfer RNA biogenesis [BR:
xfn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XfasM23_2009
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ACB93408
UniProt:
B2I977
LinkDB
All DBs
Position
2250152..2251240
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AA seq
362 aa
AA seq
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MPHWIQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMT
DALGLWLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGMGYQKLVA
KVTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDC
TRLTDNIEQNENERWPHLAIRSAQLLDAPAQYRLLRLLRWRETSARSSNKPRNWILNNEL
ASILARFPPPNMTELRYQLKKFNKSWDPLATQILEALQTPLADEAQAPLVTAPSDADKAL
LKQLQKIVAECSYDLGLPEGILASRRHLEALIEQRRWPNSLGQWRRSLLETQLQPLLSMS
DT
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcattggatccagcaccccgacactctcgctacctggtgggatcgaaaaccaacc
cgaatcggtatggataccgagttcatccgagaaggcactttttggccagaattagcgctg
gtacagatcgcaattggagatgaaatattactggtggacccactggtccccgggatgacc
gacgcgctgggactctggttggccgctccgaatgtcatcaaaattatgcacagcgccagt
gaggacttaattgcattcaaatatgcctgtggtgtgctaccacggccgctgtttgatacc
caaattggggctgcattgacgggcttgggtggtgggatgggttaccagaagttggtggcc
aaggttaccaatgtggaattgggaaaaggcgaaacacgctcagactggatgcaccgacca
ctcacgccagcgcaactagactacgcggctaacgatgtccggtatttatttgcattgcat
gacacgctcacagaacggttagcagaaatgagccgcagtgcttggttggaagaggactgc
acacgattgaccgacaatatcgaacaaaacgagaacgaacgctggccgcatctggcaata
cgttcagcacaacttcttgacgctccagcacagtaccgcctgctgcgcttattgcgctgg
cgggaaacatcagcacgctccagcaacaaaccacgcaactggatactgaacaacgaactg
gcgagcattctggcacggttccctcctcccaatatgaccgaactgcgataccagcttaaa
aagttcaataaatcctgggacccgctcgccactcaaatactggaagcgctacagactcct
cttgccgatgaagcgcaagcgccattggtaactgcacccagcgatgcagacaaagcgttg
ctcaagcaactacagaaaatcgtcgccgaatgtagctatgatctaggtttacctgagggt
atcctagcgtcgcgtcgtcatttagaagctctcatcgaacaacgccgatggccaaactca
ctcggccaatggcgccgctctctgctcgaaacgcagttacaaccattattatctatgtca
gatacctaa
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