Xylella fastidiosa M23: XfasM23_2106
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Entry
XfasM23_2106 CDS
T00692
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xfn
Xylella fastidiosa M23
Pathway
xfn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xfn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XfasM23_2106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfn03021
]
XfasM23_2106
03400 DNA repair and recombination proteins [BR:
xfn03400
]
XfasM23_2106
Enzymes [BR:
xfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XfasM23_2106
Transcription machinery [BR:
xfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XfasM23_2106
DNA repair and recombination proteins [BR:
xfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XfasM23_2106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ACB93504
UniProt:
B2IA68
LinkDB
All DBs
Position
complement(2375982..2380136)
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVESSQRKDIGLHGALKS
VFPIVSYSGNAALEYVGYKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAVK
YIKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPCRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPD
EGVQLELVPERLRGEILSFNLTDGGSVIVEAGKRITARHVKQLEASGISALAVPDEYLIG
RILSHDVIDATTGELLASANSEVNEDRIIAFRKAGIESVGTLWVNDLDRGAYLSNTLRID
PTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRKEV
AGEPVLYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLTES
FVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVDIY
GLIKYTRSNQNTCINQRPLVNVGDIVASGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRILEGAIYARLRSQIVGKVVNSGVDIK
KGEVITDPYLDGLKKSDWFALRMKDEVAVEAIDRAQKQIQAYQKEFDQRFSDKRSKITQG
DDLAPGVLKMVKVFLAVKRCIQCGDKMAGRHGNKGVISNVVPVEDMPFMEDGTPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGHRIQRMLEANAAIADLRKFLNEIYNHDKSLVGER
VDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPAGGQTQLYDGHTG
EPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDHQMVAGMPESFNVLVKEIRSLAINIE
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacatcctattcgttcaccgaaaagaagcgtatccgcaaggatttcggcaagcatcgt
tcgatcctcaaggtgccgtttttgttagctatccaggtggactcttatcgtgcattcctt
caaggagatgtggagtccagccaacgtaaagacattggtttacatggggcactgaaatca
gtatttcctattgtcagttacagcggtaatgctgctttggaatatgtcggttacaaactt
ggtgagccgatgttcgatgaacgtgaatgccggcagcgtggtatgagttatggtgcgccg
ttgcgcgtgaccgttcgtttagtcatttatgatcgtgagtcatcgacaaaagcagttaag
tacattaaggaacaggaagtatatcttggtgaaatcccgttgatgactgaaaacggtacc
ttcattgtgaatggtaccgagcgagtcattgtttcgcagttgcatcgttccccaggtgtc
ttttttgaccacgatcgtggcaagacacacagttcgggtaaattgctttatagcgctcgt
atcattccttgtcgaggttcatggttggacttcgaattcgacccaaaagatgcgctattt
acccgtattgaccgtcgccgtaagttgccggtatccattttgttgcgtgcactcggttat
tctaacgaggaaatacttggcgaattttttgaaattaatacgtttcatattaatcctgat
gaaggggtgcagcttgagttggttcccgagcggctacgtggtgagatattaagtttcaat
ctgactgacggtggcagcgtgattgttgaagccggtaagcgcatcactgcgcgtcatgtg
aagcagttggaggcttcgggtatttccgcattagctgtgccggatgagtatctaattggc
cgtattttatcccatgacgtgattgatgcgacgactggtgaattgttagccagtgccaac
agtgaggtgaatgaggatcgcataattgcttttcgcaaggctggtatcgagtcggtcgga
accctttgggtgaacgatttggatcgtggtgcttatctatctaatactttgcgtattgat
ccgactagaactcagcttgaggcgcaggttgaaatatatcgcatgatgcgtccaggagag
ccgccaactaaggaggcagctcaaaacttatttcataatttattttttacttttgatcgt
tacgacttatcaatggttggtcgcatgaagtttaatcgccgtgttggccgtaaagaagtc
gctggcgagcctgttctttacgataaaaagtatttttcagatcgtaatgatgaagaatcc
aggcgcttagtttctaagctgggcgaaacttccgatatccttgatgtgattaaaggtttg
tgtgagattcgtaatggtcgtggtgttgtcgatgatattgatcatctgggtaaccgtcgg
gtgcgttctgtcggtgagatggcagaaaatgtcttccgtgttgggcttgtccgtgtcgaa
cgtgctgtcaaagaacgtttgtcaatggccgaatccgaggggcttacgcctcaagagttg
atcaatgctaaaccggttgctgccgcgattaaggaattcttcggttcctcccaattgtcc
cagttcatggatcagaataatcctttgtcggaagtgactcataagcgtcgtctttcggca
ttgggtccaggtggattaacacgtgagcgagctggtttcgaagtgcgtgatgttcattta
agtcattatggctgtttatgtacgatcgaaacccctgaaggtcccaatattggcctaatc
aattcactggccgtgtttgctcgtaccaaccaatatggcttccttgagacaccgtatcgc
aaggttgtggaaggtcgtgttaccgatgaagttgagtacttgtcggcgattgaggaaaat
cagtatgttattgcacaggcgaacacgctgactgatgataatgggcaattaaccgagtca
tttgtgccatgtcgttttcagggggagtcgctcttgaagcccccatcttatgttcattac
atggatgtttcgccgatgcagacagtgtcagttgctgctgctttggtgccattcttggag
catgatgacgcgaatcgcgcattaatgggtgcgaacatgcagcgccaagctgtgcccacc
ttgcgtgctcagaaaccgttggttggtactggtattgagcgtacagtggcgcgtgactcg
ggtgtgactgtgaatgcgcgccgtggaggtgtgattgatcaggtcgatgctggccgtatc
gtggttaaagtcaacgaaagtgagattattggtgccaccgatgctggtgttgatatatat
ggattgatcaaatatacacgctcaaatcagaatacatgtatcaatcagcgcccccttgtg
aatgttggcgacatagttgctagtggtgacgtactggccgatggcccatcgactgacatt
ggcgaattggctcttgggcaaaacatgctgatcgcttttatgccttggaatggctacaac
ttcgaagattcaattttgctttctgaacgcgttgttgaagaggatcgctacactacaatt
cacattgaggagctgacttgtattgcgcgcgataccaagttgggatcagaggaaatttca
gctgacatccctaacgtctctgagcaggcattaaatcgtctagatgagtcaggtgtggtg
tacatcggtgctgaggtgcgcgctggcgatattttggttggtaaagtcacgccgaaggga
gaaagtcagttaactccagaagaaaagttgctgcgtgccatctttggtgaaaaagcttcg
gatgtgaaggatagttcgcttcgtgtacctccgggcatggatggtactgtaattgatgtc
caggtgttcacccgtgatggtattgagaaggacaagcgtgcgcaccagatcgaagagtat
gaaatcaagcgtgtcaaaaaggattttgatgatcaatttcgtattctagaaggtgctatt
tatgctcgtttgcgttctcagattgtaggtaaggtggttaactccggtgttgatattaaa
aagggtgaggtcatcactgatccttatcttgatggtttgaagaagagtgactggtttgca
ttgcgtatgaaggatgaggttgctgttgaggcaatcgatagggcgcagaaacagatacag
gcgtaccagaaagagttcgatcagcgtttttctgacaagcgtagcaaaatcactcagggg
gacgacttggctccgggtgtattgaaaatggtcaaggtgtttttggctgtaaagcgttgt
attcagtgtggcgataagatggccggacgtcatggtaataaaggtgtgatttccaacgtt
gttcccgttgaagacatgccatttatggaggatgggacacctgtcgatatcgtgttaaat
ccgttgggcgttccctctcgtatgaatattggccaaatcttagaggtgcatttggggtgg
gcagctaagggtttggggcatcgaattcagcgtatgctggaggccaatgctgctattgcg
gacttaagaaaatttcttaatgaaatttataatcatgataaaagcttggttggcgagcgt
gtagatctgtctcagttcagtgatgacgaattgctgaatatggctaagaatctgactgat
ggtgtgccgatggcgagcccggttttcgatggtgcctctgaacaagagatcaaacgtatg
ctggatctcgcggaattgccggccggcggtcagacccaactctacgatggccatactggg
gaacctttcgatcgtaagactacggtcggttacatgcactatttaaaattgaaccatttg
gttgatgacaagatgcacgctcgttcaactggcccttattcactggttactcagcaacca
ttgggtggtaaggcccagtttggagggcagcgttttggcgaaatggaagtttgggccttg
gaagcttatggcgcagcttacactctgcaggaaatgttgactgtaaagtctgatgatgtt
caggggcgtaatcagatgtacaagaacattgttgatggtgatcatcagatggtggcaggt
atgcctgaatcttttaatgttctcgtgaaagaaatccgctccttagcaattaatattgag
ttggaagataactaa
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