Xanthomonas fragariae: BER92_00235
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Entry
BER92_00235 CDS
T04667
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BER92_00235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfr03019
]
BER92_00235
Enzymes [BR:
xfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BER92_00235
Messenger RNA biogenesis [BR:
xfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BER92_00235
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
baeRF_family2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOD13464
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All DBs
Position
complement(51312..53024)
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AA seq
570 aa
AA seq
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MSDKPLTDLTFSTFDLHPSLIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRSALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEYMNEPEKLVVETETITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEVDENEGESVGTIFRE
AREQRAAEEQRRGGGRGGPGSASLSGSGGGRRDGADGKPRPRRKPRVEGQAPATAAPTET
PMVAAASAEAPSTSIVADVERTPRKRRRRRNGRPIEGVEPVAATPVAEPAAPRKPTQVVA
KPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgaccttctccacgttcgacctgcatccctcgctg
atcgccgggctggagagcgccgggtttacccggtgtaccccgatccaggcgctgaccttg
ccggtcgcgctgccgggcggcgatgtggccggccaggcccagacgggtaccggcaagacc
ctggcgttcctggtggcggtgatgaaccgcctgctgattcgctcggcgctggccgatcgc
aagccggaagacccgcgcgcgctgatcctggcaccgacccgcgaactggcgatccagatc
cacaaggatgccgtcaagtttggcgccgatctgggcctgcgctttgcgctggtctacggc
ggtgtggactacgacaagcagcgcgaactgctgcagcaaggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcagcacaaagtagtctcgctgcacgcctgc
gagatctgcgtgctggacgaagccgatcgtatgttcgatctgggcttcatcaaggacatc
cgctttctgctgcggcgcatgcccgagcgcggcacccggcagacgctgctgttctcggcc
acgctcagccatcgcgtgctggagctggcctacgagtacatgaacgagccggaaaagctc
gtagtcgaaaccgagaccatcaccgctgcccgcgtgcgccagcgcatctattttccatcc
gacgaagaaaagcagacgctgctgctaggcctgctgtcgcgtagtgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtcgagcgcgtggcgcgcaccctggagcgtcat
ggataccgagtcggcgtgctgtcgggcgatgtgccgcagaagaagcgcgaatcgttgctc
aaccgcttccagaagggccagttggagatcctggtcgccaccgacgtggcggcgcgcggt
ctgcacatcgacggggtcaagtacgtctacaactacgatctgccgttcgacgcagaagac
tacgtgcaccgcatcggccgtaccgcacgcctgggcgaagagggcgacgcgatcagcttc
gcctgcgagcgttacgcgatgagtctgccggacatcgaggcttatatcgaacagaagatt
ccggtcgagccggtgacttccgagttgctgacgccgttgccgcgtgcggcacgcgtgccg
gtggaaggcgaagaggtcgacgaaaatgaaggcgagagcgtgggcacgatcttccgcgaa
gcgcgcgagcagcgagccgccgaagagcagcgtcgtggcggtggtcgcggtggtccggga
agcgcctcgctcagtggcagtggcggcggtcgccgtgatggcgccgatggcaagccgcgt
ccgcgtcgcaagccgcgtgtcgaaggccaagctccggcaactgccgcgccgaccgaaaca
ccgatggttgctgcagcgtcggcagaggcaccttccaccagcatcgtggccgatgtcgaa
cgcacaccgcgcaagcgtcggcgtcgccgcaacggccgcccgatcgaaggtgtcgagccg
gttgccgccacgccggttgcagaacctgccgcaccgcgcaagccgacccaggtggtcgcc
aagccggtgcgcgccgccgccaagccgtccggcagcccatcgctgctgagtcgcatcggc
cggcgcctgcggtcgctggtttccggtaactga
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