Xanthomonas fragariae: BER92_00245
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Entry
BER92_00245 CDS
T04667
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BER92_00245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfr03021
]
BER92_00245
03019 Messenger RNA biogenesis [BR:
xfr03019
]
BER92_00245
Transcription machinery [BR:
xfr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BER92_00245
Messenger RNA biogenesis [BR:
xfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BER92_00245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
AAA_25
OB_RNB
AAA
AAA_22
TFIIA
Motif
Other DBs
NCBI-ProteinID:
AOD13466
UniProt:
A0A1Y6H1E4
LinkDB
All DBs
Position
53781..55622
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AA seq
613 aa
AA seq
DB search
MSDHPSSDIGSVDAPVEKRVRKPRVSKTAVTNEDGGAQQPNLPLPASPAPDAPQLPSRAP
AQTSSDGVHVGSAHSASQGGDNYGESREGGQSQQQRFNQAQQQQHQNQAQSQGQGYNQGQ
APSQGQSAVQNQQGQGQGQNQQGNRRDRFRNRRDRGPRDRFGNEIGGSGMPSTDGSNEPF
IARPHPAVPEGFPVYSLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLTRH
GEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRLVLRTGDHLSGRIRFPK
DGERYFALSIIDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRILDLM
APQGKGQRALIVSPPKAGKTMMMQQVATAITNNHPEVHMIVLLIDERPEEVTEMQRTVRG
EVISSTFDEPAARHVQVAEMVIERAKRLVEHKRDVVILLDSITRLARAYNNVVPSSGKVL
TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHL
NRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKT
TKSNDEFFSSMKR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatcatccttcttctgatatcgggagcgtcgacgctcccgtcgagaaacgcgtg
cgcaagccgcgcgtgagcaagaccgcagtcaccaatgaagatggtggcgcacagcagccc
aacctgcccttgcccgccagccccgcacccgatgccccgcagctaccgtcgcgcgcaccg
gcgcagacgtccagcgatggcgtacacgtcggcagcgcgcacagcgccagtcagggcggc
gacaactacggcgagtcccgcgagggtggccagtcgcagcagcagcgcttcaaccaggcg
caacaacagcagcaccaaaatcaggcgcaaagtcaggggcaaggctacaaccaggggcaa
gccccgtcgcagggtcagagcgccgtccaaaatcaacagggccaggggcaggggcagaac
cagcagggcaatcgccgcgaccggttccgtaaccgccgcgaccgtgggccgcgcgatcgc
ttcggcaacgaaataggtggcagcggcatgccatcgaccgatggcagcaacgagccgttc
atcgcacgtccgcacccggccgtgccggaaggcttcccggtctattcgctgagcgatctc
aagcgcatgccggcacagaaactgctggatatcgccgatcagctcaatatccaggaaggc
gtggcgcgcgcccgcaagcaggacgtgatcttcgccctgctcaaggtgctgacccgtcac
ggcgaaggcgttgctgccgacggcgtgctggaaatcctgcccgacggcttcggtttcctg
cgtgccgcagaagccagctacctggccggcccggacgatacctacatctcgccgagccag
atccgccgcttagttctgcgcaccggcgatcacctgtcgggccgtatccgcttcccgaaa
gacggcgaacgttatttcgcgctgtcgatcatcgacaccatcaacggcgagccgctggaa
gcgagcaagaacaaggttctgttcgagaacctgaccccgctgttcccgcgtcgccgcttc
cgtctggagcgtggcgatggatcgaccgaggacatcaccgggcgcatcctggatctgatg
gccccgcagggtaagggtcagcgcgcgctgatcgtctccccgcccaaggccggtaagacg
atgatgatgcagcaggtggccacggccatcaccaacaatcatcctgaagttcacatgatc
gtgttgctgatcgatgagcgcccggaagaagtaaccgaaatgcagcgcaccgtgcgcggc
gaggtcatctcctccacgttcgatgagcctgctgcacgccacgtgcaggtcgccgagatg
gtgatcgaacgggccaagcgcctggtcgaacacaagagggacgtggtgatcctgctcgac
tcgatcacccgcctggcgcgtgcctacaacaacgtggtacctagttccggcaaggtgctg
accggtggtgtggacgccaatgcgttgcaccgtccgaagcgtttcttcggtgcggcccgt
aacgtcgaagaaggcggctcgctgaccatcattgccactgcgctggtggaaaccggcagc
aagatggacgaggtgatctacgaagaattcaagggcaccggcaacagcgaagtgcatttg
aatcgccgcatcaccgaaaagcgcgtttacccggcgatcgatatcaaccgctcgggcacg
cgtcgcgaagatctgctgatcgagccggagttgctgcagaagatctggatcctgcgcaag
ttactgcatccgatggacgagatcgcggcaatggaattcctgttggacaagatgaagacc
accaagtccaacgacgagttcttcagttcgatgaagcgctga
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