Xanthomonas fragariae: BER92_01020
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Entry
BER92_01020 CDS
T04667
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xfr
Xanthomonas fragariae
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfr03032
]
BER92_01020
03400 DNA repair and recombination proteins [BR:
xfr03400
]
BER92_01020
Enzymes [BR:
xfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BER92_01020
DNA replication proteins [BR:
xfr03032
]
Prokaryotic type
DNA Topoisomerases
BER92_01020
DNA repair and recombination proteins [BR:
xfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BER92_01020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AOD13575
UniProt:
A0A1Y6HBX9
LinkDB
All DBs
Position
228124..230616
Genome browser
AA seq
830 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKSADDIFLATDPDREGEAISWHIAEILKERGLLEGKPMQRVVFTEITPR
AIKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIDAHCRHPSQPFQARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRP
TSALRTPAQVAGFLSDDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSQHVFRASGTT
VVVAGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNIPLDRIVTDQHFTQPPPRFTEAAL
VKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TAKLEDDLDAVSRGEAEWIPLMEKFWGPFKQLVEDKKDSLDKTDAGSVRVLGADPVSGKE
VSARIGRFGPMVQIGTVEDEEKPTFASLRPGQSIYSISIEDALELFKMPRALGQDKEQDV
SVGIGRFGPFVRRGSVYASLKKEDDPYTIDLERAVFLIEEKEEIARNRVIKDFEGSDIQV
LNGRFGPYISDGKLNGKIPKDREPSSLTFEEVQQLLADTGKPVRKGFGAKKATLKKNAVR
DSSPKKPAVKKTATKTATTKTADKKLTARKTTAKKATKRVVKKTLSKAAG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgtcctggcctcgtatgggcacgtgcgcgacttggtccccaag
gagggcgcggtcgatccggacaacggctttgcgatgcgttacgacctgatcgaaaagaac
gagaaacatgtcgaagccattgcgcgtgccgccaagagcgccgacgacatctttctggcg
accgacccggaccgcgagggtgaggcgatcagctggcacatcgccgagatcctgaaagag
cgaggcctgctcgagggcaagccgatgcagcgggtggttttcaccgagatcaccccgcgc
gcaatcaaggaagcgatgctcaagccgcgcgcgatcgctgccgatctggtggatgcgcag
caggcgcgccgcgcgctcgactatctggtgggcttcaacttgtcgccggtgctgtggcgc
aaggtacagcgcggcctgtccgccggccgcgtgcagtcgccggcgctgcgcatgatcgtc
gagcgcgaagaagagatcgaagccttcattgcgcgcgaatactggtccatcgatgcgcat
tgccgacatccgtcgcagccgttccaagcgcgtctgatcaagctggacgggcagaaattc
gaacagttcacagtcactgacggcgacaccgccgaagcggcgcggctgcgcatccagcag
gctgcacaaggcgtgctgcatgtcaccgatgtggccagcaaggagcgcaagcgccgccct
gccccgccgttcaccacctccacgctgcaacaggaagcctcgcgcaagctcggcttcacc
acccgcaagaccatgcaggtggcgcagaaattgtacgaaggtgtcgcgctcggcgatgaa
ggctcggtcggtctgatcagctatatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctggccgaaatccgcgacgtcatcgcgcgcgacttcggcaccgcctcgttgccggatcag
cccaacgcctacaccaccaaatccaagaacgcgcaggaagcgcatgaagcggtgcgtccg
acctcggcactgcgcacgccggcacaggtggcgggctttttgtccgacgacgagcgccgc
ttgtatgaactgatctggcgccgcgcggtcgcctgccagatgatcccggccacgctcaat
accgtcagcgtcgatctgtccgccggcagtcaacacgtgttccgcgccagcggcaccacc
gtggtggtcgcaggttttcttgcagtctacgaagaaggcaaggacaccaagagcagcgag
gacgaggacgaaggccgcaagctgccgctgatgaaggctggcgacaatatcccgttggac
cgcatcgtcaccgatcagcatttcacccagccgccgccgcgcttcaccgaagcggcgctg
gtcaaggcgctggaggaatacggcatcggccgcccgtccacctacgcctcgatcatccag
accctgcagttccgcaagtatgtggaaatggagggccgcagcttccgccccaccgacgtg
ggccgcgcggtgtccaagttcctttccgggcatttcacccgctacgtggattacgacttc
accgccaagctcgaagacgatctggatgcagtctcgcgtggcgaagcggaatggatcccg
ttgatggagaagttctggggcccgttcaagcaactggtcgaggacaaaaaggattcgctg
gacaagaccgatgccggcagcgtgcgcgtgctcggcgccgatccggtcagcggcaaggaa
gtcagcgcacgtatcggccgcttcggtccgatggtgcagatcggcaccgtcgaagacgaa
gaaaaacccaccttcgcctcgctgcgacccggccagagcatctattcgatttctatcgaa
gacgcgctggaactgttcaagatgccgcgcgccctgggtcaggacaaagagcaggacgtc
agcgtcggcatcggccgcttcggcccgtttgtgcgccgcggcagcgtgtatgcgtcgctg
aagaaagaggacgacccatacaccatcgatctggagcgtgcggttttcctgatcgaagag
aaggaagagatcgcacgcaaccgcgtgatcaaggacttcgaaggcagcgacattcaggtg
ctcaacggccgcttcggcccatacattagcgatggcaagctcaatggcaagatccccaag
gatcgcgagccgtcttcgttgacgttcgaagaagtgcagcagttgctggccgacaccggc
aagccggtgcgcaagggctttggcgcgaagaaggccacgctcaagaagaacgcggtcagg
gattcctcgccgaagaaacctgcggtcaagaagaccgcgaccaagactgcgacgaccaag
accgctgataaaaagctgacggccaggaaaactactgccaagaaagctaccaagcgcgtg
gtcaagaagaccctcagcaaggccgcgggctga
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