Xanthomonas fragariae: BER92_05135
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Entry
BER92_05135 CDS
T04667
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BER92_05135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfr03021
]
BER92_05135
03400 DNA repair and recombination proteins [BR:
xfr03400
]
BER92_05135
Enzymes [BR:
xfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BER92_05135
Transcription machinery [BR:
xfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BER92_05135
DNA repair and recombination proteins [BR:
xfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BER92_05135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AOD14227
UniProt:
A0A1Y6HJD7
LinkDB
All DBs
Position
1144360..1148574
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYDLLRSIDLQSEVTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEADGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTVEGLIMTPIVEGGDVVEPLKERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEEASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGALVAVSRSGELSVLDGHGRERERYKLPYGATITVKDGDAVKAGQGVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIVR
IVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIQQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGTSKFLNGEQVERQRVIEENARLIKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLTYHAGRRKSSGLTDSEM
ETLSGKPTVVEPVTTVADAGADED
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcctcgcctgacctgatccgttcgtggtcttacggtgaagtgaagaag
cccgaaaccatcaactaccgtaccttcaagcccgagcgtgacggccttttctgcgccgcc
atcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgcggtgtggtctgcgaaaaatgcgggaccgaagtcaccttggccaaggtgcgtcgtgag
cgcatgggtcatatcgacctggcctcgccggtcgcgcatatctggttcctcaagtcgctt
ccttcgcgtatcggtttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtggttaccgagcctggcctgaccccgctagagcgccgccagctgctg
accgaagagcagtacctgaccgcacgtcaggagtacaacgacgatttcgacgccgcgatg
ggtgccgaggctgtctatgatctgctgcgatcgatcgatctgcagtcggaagtgacccgt
ttgcgcgaagaaatcgccagcaccggttcggaaaccaaacttaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgccctgagtggatggtcatgacc
gtgttgccggtgctgccgccggatctgcgtccgctggtgccgttggatggcggccgcttt
gcgacctcggatctgaacgatctttaccgccgcgtgatcaaccgcaacaaccggctgcgt
cgtctgctcgaactcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggatgcgctgctggacaacggccgtcgtggtcgtgccatcaccggcaccaac
aagcgtccactgaagtcgctggccgacatgatcaagggcaagcagggtcggttccgtcag
aacctgctcggcaagcgcgtggattactctggtcgttcggtcatcaccgtcggtccgtat
ctcaagttgcatcagtgcggcctgccgaagaagatggcgcttgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctagcaaccactatcaaggctgccaagaagctg
gtcgagcgcgaagaggctgaggtgtgggacatcctcgaagaagtcattcgcgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtttgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtacggcattcaacgccgac
ttcgacggtgaccagatggctgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggctaacggcgagccgatcatc
gtgccgtcgcaagacgtggtgttgggcctttactacatgagccgcgcgctcgagaacaag
aagggcgagggcatggtgttcgccaacaccagtgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcacccaggtggatgtcgaagccgac
ggcaagcgcagtagcggtacctcgatcgtggacaccacggtcggtcgagcgctgctgagc
gaaatcctgccggaaggtctgccgtttcagcttgccaacaccgagatgaccaagaagaac
atctcgcgtctgatcaactccagctatcgtctgctcggcttgaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctatgcctacgcaacccgagcaggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggcagaagccgaa
gtgcttgaaatccaggagcagtatcagtccggtctggttaccgctggcgagcgttacaac
aaggtcgtggacatctggtcgcgtaccagtgagcgcatcgccaaggcaatgatggacact
atcggtaccgagaaggtggaaaacgccaagggcgagaccattgaccagaagtcgatgaac
tcgctctacatcatggccgactccggtgcccgtggtagtcaggcgcagatccgtcagctg
gccggtatgcgcggcttgatggcgcgtccggacggctcgatcatcgagacgccgatcaag
gcgaacttccgcgaaggcttgaacgtgcaggagtacttcaactccacccacggtgcccgt
aaaggtctggccgataccgcgctgaagactgccaactcgggttacctgacccgtcgtctg
gtcgacgtggcgcaggacgtggtgatcaccgaagtcgattgcggcaccgtcgaagggttg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgaaggagcgcgtgctg
ggccgtgtggtggccgaggacgtatacttgcccggcaacgatgaagagccgatcgttacc
cgtaacacgctgctcgatgaagcgtgggtggcgaaattggaagaggccagtgtgcagtcg
gtgaaagtgcgttcgacgattagctgcgagtcgtcgttcggcgtgtgcgcacgttgctac
ggtcgcgatcttgcacgtggtcaccaggtcaacatcggtgaagcggtcggcgtcatcgcc
gcacagtcgatcggtgagccaggtacccagctcaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggctgcggttgacaacatcacggtcaagacgaccggttcggtgaag
ttcaataacctcaagtcggtggcgcatgccagtggtgcgctggtcgctgtctcgcgttct
ggcgaactgtccgtgctcgatggccatggccgtgagcgcgagcgttacaagctcccgtac
ggcgccactatcaccgtcaaagacggcgatgcggtcaaggccgggcagggcgttgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgaaaagaccgacgaactgaccggtctagcctcgcgc
gaaatcaccgacccgaagcgtcgcggtgcacatgccaaggaactgcgcccaatcgtgcgc
atcgtcgatggcaagggcaatgatctgacgattccgaacacggatctgccggctcagtac
ctgttgccgccgcgctccattgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggttgccaagatccagcaggaagcgtccaagactcgcgacatcaccggcggtctgccg
cgtgttgccgatttgttcgaagcacgcaagccgaaggatcctgcgatcctggccgagcgc
tcgggtatcatcagcttcggcaaggacaccaagggcaagcaacgtctaatcatcaaagat
accgatggttcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgaacacgtgaccaagggcgaaacggtcgtagacggcgagccgagcccgcaggacatc
ctgcgtctgctgggtgtcgagccgttagccgcgtatctggtcaaggagatccaggacgtg
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacgcgccagatg
ctgcgtaaggttgagatcaccgaccaaggcaccagcaaattcctcaacggcgagcaggtc
gagcgccagcgcgtcatcgaggagaatgcccgcctcataaagcgcaacgaactgccggcc
aagtacgatccggtgctgctgggtatcaccaaggcctcgctggccactgagtcatttatc
tctgcagcgtcgttccaggagaccacccgcgtgttgaccgaggctgctgtgcgcggcacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcggctgatcccggccggt
accggtctgacgtaccacgccggacgtcgcaaatcttcgggtctgaccgactcggaaatg
gaaacgctgtcgggcaaaccgacggtggtcgaaccggtcacaactgtggccgacgctggc
gcggacgaggattaa
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integrated database retrieval system
