Xanthomonas fragariae: BER92_06360
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Entry
BER92_06360 CDS
T04667
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03030
DNA replication
xfr03430
Mismatch repair
xfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BER92_06360
03430 Mismatch repair
BER92_06360
03440 Homologous recombination
BER92_06360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfr03032
]
BER92_06360
03400 DNA repair and recombination proteins [BR:
xfr03400
]
BER92_06360
Enzymes [BR:
xfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BER92_06360
DNA replication proteins [BR:
xfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BER92_06360
DNA repair and recombination proteins [BR:
xfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BER92_06360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AOD14417
UniProt:
A0A1Y6HEU3
LinkDB
All DBs
Position
complement(1395417..1399001)
Genome browser
AA seq
1194 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPNQADPKKAKQANLLSRAVELDMPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFGEGRADLAEQQLADWQRTFGDGLHL
EITRTGRDGEERFNQFALHAAGARGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDP
KRPHHYSDQQYLKSGEEMAALFADVPDAIDNTHALAQRCNIEMRLGTYFLPAYPVPENET
LDSWIRSQSRDGLAARLEKSPIAPGKNRQDYVDRLEFELDTIIEMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVAHKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARHSRA
GIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGKQEIVYPDSRTEVILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDLMEKFAGYGFNKSHAAAYA
LISYQTAWLKRHYPAEFMAATLSSDMDNTAKVVGFLDEVRNLGLTVKPPGINASAYMFEA
ASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMINA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSVPAMRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDTHRDEVRELVGCDLGSLEKILTSQQRGGGGGDGEKRAW
RPEVSAILAGLVIGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIVKG
GLREDEFNGGYSLRIRQCWDYEQICAEHAQRLSLRLDLREKQAWKRVDALLAKHRPGKTP
LRLDLLLRAPSGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKIKYNPPWA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgttcatctgcacgttcacaccgagttctcgctggcggattcc
accatccgtgtgcccgagaaaccgaatcaggctgatccgaaaaaggccaagcaggccaac
ctgctcagccgcgcggtcgaactcgacatgcccgcgctggcagtcaccgacctgaacaac
ctgttcgcactggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgattgcc
ggcgccgacgtgatgatcgctactccggacatgacgccctggcgtatgactctgctgtgc
cgcgatcgcgagggctatctgagcctgtcgcgtctgctcacccgcgcctggatggaaggc
caccggcccgaaggcggggtggcgatccatcccgagtggctgcaggccggacacgccaat
ctgtttgcgctggccggccgcgacagcctggccgggcgcctgttcggcgaaggccgcgcc
gacctggctgagcagcagctcgccgactggcagcgcacgttcggcgatggcctgcatctg
gaaatcacccgtaccgggcgcgacggcgaagagcgtttcaaccagttcgcgctgcatgcc
gccggtgcgcgcggcctgccggtggtggccagcaacgatgtgcgctttctgtacgccagc
gacttcaacgcgcacgaggcgcgcgtgtgcatttcttcggggcgcgtgctggacgatccc
aagcgtccgcaccactacagcgaccagcaatacctgaagtcgggcgaggagatggccgcg
ttgttcgccgacgtgcccgacgccatcgacaacacgcatgcgctggcgcaacgctgtaat
atcgagatgcgcctgggcacctacttcctgccagcctatccggtgccggaaaacgaaacg
ctggacagctggatccgcagccagtcgcgcgatggtctggcggcacgcttggaaaagagc
ccgatcgcaccgggcaagaaccgccaggattatgtcgatcgcctggaattcgagttggac
accatcatcgagatgggctttcccggctatttcctgatcgtggccgacttcatccaatgg
ggaaaaaaccagggcattccgatcggcccgggccgcggttccggtgccggctcgctggtg
gcgtgggcactgcagatcaccgatctggacccgctgccctacaacctgctgttcgagcgc
ttcctaaatcccgaacgcgtgtccatgcccgacttcgacatcgacttctgcatggatcgc
cgcgacgaagtgatcgactacgtggcgcacaagtacgggcgcgaacgggtcagccagatc
atcacttacggcaccatggccgccaaggcggtggtgcgcgatgccgggcgcgtgctcggc
ttcacctatggtctggtcgacagcgtggccaagctgatccccaacatcctgggcatcacg
ctcaaggatgcgatgggagaaggcaaggactcggagatggcctcgccggatctgatccag
cgctatcaggtcgaagacgacgtgcgcgatctgatggatctggcccgtcagctcgaagat
ctcacccgcaacgccggcaagcacgctggcggggtggtgatcgcacctgagccactgtcc
gaattctgcccgctgttcgccgaacacgacgaggacgggcgcggcaagaatccggtcact
cagttcgacaaggacgacgtcgaagcggtcggcctagtgaagttcgacttcctcggcctg
cgcacgctgaccatcatcgattgggcagtcaaggcgatcaacgcacgccactcgcgcgcc
ggcatcgacccggtcgacatcaccgctattccgctcgacgacgtgcctacctacaagggc
gtgttcgcctccggcaataccggcgcggtgtttcagttcgaatcctcaggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgcttcgaagacctgatcgcgctggtatcgctgtac
cgccctggcccgatggacctgatccctgacttcaacgcgcgtaagcacggcaagcaagag
atcgtctacccggattcgcgcaccgaagtcatcctgaaagacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcgattattcgttgggcggcgcc
gacctgctacgccgcgccatgggcaaaaaagtgccggccgaaatggccaagcaccgagag
attttccgcgaaggcgcggccaagggcggcgtgagcgcgcacaaggccgacgaaatcttc
gacctgatggagaagttcgccggctacggtttcaacaaatcgcacgccgccgcgtacgca
ttgatcagctaccagaccgcctggctgaaacggcattacccggccgaattcatggccgcc
acgctgtcctcggacatggacaacaccgccaaggtggtcggctttctcgatgaagtgcgc
aatctcggcctgactgtcaagccaccgggcatcaacgcatcggcgtacatgttcgaggcc
gcaagcccggacacgattcaatacggcctgggcgcgatcaagggcgtcggccagggcgca
tgcgaggcgatcgtcgaagaacgccagcgcggcggaccttacacgacgctgctggatttt
tgcacccgcgtgggtaccgcaaagctcaaccggcgcacgctggaagcgatgatcaatgct
ggcgccatggacgggctgggcaagaaccgtgcctcgctgatgctgcaattgccggaggtg
atgaaggccaccgagcagatggcgcgcgaacgtgcctcgggccagaactcgctgttcggc
gggccggacccgagcgtgccggcaatgcgcctggatctgcccgaaagcaaagagtggccg
cttggtcagttgctcaccggcgagcgcgaaacgttgggcttttatctcagcggccatccg
ttcgacacgcaccgggacgaagtacgcgagctggtcggttgcgacctgggttcgctggaa
aagatcctgacctcgcaacaacgcggcggcggtggcggcgatggcgagaaacgcgcctgg
cgcccggaagtcagtgcgattctggcgggcctggtgatcggcgtacgccgcaagggcgac
agccaggtgttcgtgcagttggaagacggtcgcggacgggtcgaatgcagtgcgttttcc
gatgcgatggccgagttcggccacctgctcacccgcgaccgcatcctgatcgtcaagggc
ggcctgcgcgaggacgaattcaacggcggctacagcctgcgcatccgccaatgctgggac
tacgagcagatctgcgccgagcatgcacagcggctgtcgctgcgcctggacctgcgcgaa
aaacaggcttggaagcgtgtcgacgcactattggccaagcaccgccccggcaagacgcca
ttgcgtctggatctgctgctgcgcgcccccagcggcggcgtcgccggcatgcttgatctc
aatggcagccactcggtgcgcatcgatcagcaactgatggacagcctgcgcgccgatccg
gcagtacgcacgttgaagatcaagtacaacccaccgtgggcttga
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