KEGG   Xanthomonas fragariae: BER92_06910
Entry
BER92_06910       CDS       T04667                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
xfr  Xanthomonas fragariae
Brite
KEGG Orthology (KO) [BR:xfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xfr03400]
    BER92_06910
Enzymes [BR:xfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BER92_06910
    5.6.2.6  RNA 3'-5' helicase
     BER92_06910
DNA repair and recombination proteins [BR:xfr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BER92_06910
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 PhoH
Other DBs
NCBI-ProteinID: AOD14513
UniProt: A0A1Y6H8G2
LinkDB
Position
1519014..1523408
AA seq 1464 aa
MHPVLQQFHPVVAAWFAQTFAAPTPAQIAAWPAIQAGRHTLVAAPTGSGKTLTAFFAAID
ALIRDGLSNGGGLPDETRVIYVSPLKALSNDIHLNLDAPLQGIRAALAASGLPDVAVRTA
VRTGDTPQRERAQARRRPPHILVTTPESLYVLLGSASGRNALRHVRTVIVDEIHAVASDK
RGSHLSLTLERLQRLAERSITRVGLSATQKPIETVAQFLVGAGEDGQPPECEIVDIGYTR
ARDLALALPPTPLSVVMSNDQWLQVYADVAKLAQQQRTTLVFVNTRRMAERAAQHLGDLL
GKQRVAAHHGSLSRETRLLAEQRLKAGELTVLVATASLELGLDIGDVDLVCQLGSPRSIA
TFLQRAGRSGHAVGGTPKARLFAQTRDELVECAALLESVRRGELDALRIPLAPIDVLAQQ
IVAEAACEDWDEDALFALVRRAWPFAQLSRVTFDSVVRMLCEGFSTQLVPRAGYLHRDAV
HRRLHARRGARMTALTSGGTIPETGDYSVVLEPQAEKIGTVNEDFAVESLTGDVFQLGNA
SYRILRVDAGRVRVEDAKGAPPNIPFWLGEAPGRSDELSAAVSRLRGEIAARLDSAPHQA
ARDWLQSELGLFAEAAQQLVDYLAHACAALGAMPTQQCLVMERFFDASGGTQLVIHSPYG
SRINRAWGLALRKRFCRTFNLELQAAATEDAIVLSLSTSHSFALEEVARYLHSSSAEHVL
IQAVLDAPLFGVRWRWNATNAMALPRFTGGNKVAPQLQRMKSEDLLAAVFPDQLACAENL
VGEREVPDHPLVTQTLEDCLHQAMDSEGWLQVLRGLESGAIKLLVRDLAAPSPLAAEALN
ARPYAFLDDAPLEERRTQAVQSRRYTPQTSDDLGRLDRQAIDAVRQEAWLQPRDVEEMHE
ALVGLGVLPVDEAADAQWQTWLDALAADGRASCLALNGAPALWISAARIDWFLPLYPDAS
AQPPVQAPEDCRVAEWEREWAVREVLRGRLAAVGPAQVPALSKALQLPEDAIVLALEALQ
REGYVMAGHFSAQTQSEEWCERHLLARIHRYTLGRLRREIEPVSQRDYARFLFEWQHVDS
SSRVAGPDALAGVVGQLEGFEAPAVLWESELLPVRVRDYQPAWLDELCTAGRTVWARLRP
GGGCSGAALRATPIVLLPRREAQRWSSLTRHANDEPLGARAQRVVAVLQQQGALFFDEIA
DAARLMSIELEDALGELVMRGLAHCDSYAGLRALLVPASKRPSALSRHRRRASALGIRDA
GRWAPVRALPESPSAEASERHQDTLEHVARTLLRRYGVVCWRLLAREAAWLPPWRELLRM
YQRLEARGDIRGGRFIAGLSGEQFALPDAIAALRRVRAQALPQQWVCVSASDPSNLLGSL
LPGERVARVPGNRVAYLDGMPMAVWAADRFQPLQELTIEQADQALGLLQRGPGAAEQTPM
QQWLAQPSGGIGRVPVARGSGRDK
NT seq 4395 nt   +upstreamnt  +downstreamnt
atgcatcctgtcctgcaacagttccatcctgtggttgccgcatggttcgcacagaccttt
gctgcgcccacgccggcgcagattgctgcgtggccggcgatccaggccgggcggcatacc
ttggtggccgcgccgaccggctcgggtaagacgttgaccgcgtttttcgccgctatcgat
gctttgatccgcgatggtctgtccaacggtggtgggttgcccgacgaaacccgcgttatt
tacgtgtcgccgttgaaggcgctgtccaacgacatccacctcaatttggatgcaccgttg
cagggcatccgtgcggcgctggccgcaagcgggttgccggatgttgcagtgcgcacagcg
gtgcgcaccggcgacacgccacaacgtgagcgagcacaagcgcggcgcaggccgccgcat
attctggtgactacaccggagtcgttgtatgtgctgttgggctcggcctccggccgcaac
gcgctgcggcatgtgcgcaccgtcatcgtcgatgagatccacgcggtggcgtcggacaaa
cgcggcagccatctgagcctgacattggagcgattgcagcggctggccgagcggtcgatc
acgcgggttggattatcggcaacgcagaagcccatcgagacagtggcgcagtttctggtt
ggcgcaggcgaagacggccagccaccggagtgcgaaatcgtcgatatcggctacacccgc
gcgcgcgatctggcactggcattgccgccgacgccgctgagtgtggtgatgtccaacgat
caatggctgcaggtgtatgcggatgtggccaagcttgcgcagcaacaacgcactacgctg
gtgttcgtcaacacacggcgcatggccgagcgagctgcgcagcatctgggcgatctgctc
ggcaagcagcgcgtcgcagcgcatcacggaagcttgtcgcgcgagacgcgtttgctagcc
gagcaacggctcaaagccggcgagctgaccgtgctggtggcgaccgcatcgctggaactt
ggcctggatatcggtgatgtcgatctggtgtgtcagctcggttcgccgcggtcgatcgca
acgttcctgcagcgcgccgggcgctccggccatgcggtcggtggcacgccgaaggcacgg
ctgtttgcgcagacgcgcgacgagttggtcgaatgcgccgcgcttctggaaagcgtgcgc
cgtggcgagttggatgccttgcgcattccgctggcgccgatcgacgtacttgcgcagcag
atcgtagccgaggctgcatgcgaagattgggatgaagatgcgttgtttgcgctggtgcgt
cgcgcatggccattcgcgcagttgagccgcgttacgttcgacagtgtggtgcgcatgttg
tgcgagggtttcagtacacagcttgtgccgcgcgcaggctatctgcatcgcgatgcggtg
caccggcgcttgcatgcacgtcgtggcgcgcgcatgactgcgctgacctccggcggcacc
attcccgagaccggcgactacagcgtggtgttggagccgcaggcggaaaagatcggtacg
gtgaacgaggattttgctgtcgaaagtctcaccggcgatgtgttccagctcggcaacgcc
agttaccgcatcctgcgtgtggatgcggggcgcgtgcgcgtggaagatgccaagggcgca
ccgccgaatattccgttctggctgggcgaagcgccgggccgtagcgatgagttgtcggca
gcagtgtcgcgtctgcgtggtgagatcgccgcgcggctggacagcgcgccgcatcaagcg
gcgcgcgattggctgcaaagcgaattggggctattcgcagaagcggcgcagcaactggtg
gactatctggcacatgcctgcgcggcgctgggcgcgatgccgacacagcaatgcctggtg
atggagcgcttcttcgatgccagcggtggcacccaattggtgatccactcgccatacggc
agccgcatcaatcgtgcgtggggcctggcgttgcgcaaacgtttttgccgcaccttcaat
ttagaattgcaggccgcggcgaccgaggatgcgatcgtgttgtcgctctccaccagtcac
agttttgcgttggaagaggtggcccgctatctgcattcctcatcggccgaacatgtgctg
atccaggcggtgctggatgcgccgttgttcggcgtacgttggcgttggaacgcaaccaat
gcgatggcactgccgcgctttaccggcggcaacaaggtggcgccgcagttgcagcggatg
aagtcggaagatctgctggccgcggtgttccccgatcagctcgcctgcgccgagaatctg
gtcggcgagcgtgaggtgccggaccatccgttggtgacgcagacgctggaagactgcctg
catcaggccatggacagcgaaggttggttgcaggtgttgcgcgggttggaatccggtgcg
atcaagttgcttgtgcgcgatctagccgcgccgtcgccgcttgcggccgaagccttgaac
gcgcgtccgtacgcgtttctggatgacgcaccgctggaagagcgccgtacccaggccgtg
caaagccgccgctacacgccacagaccagtgacgatctagggcggttggatcggcaagcc
atcgatgcggttcgccaggaagcttggctacaaccgcgcgatgttgaagaaatgcacgag
gcgctggtcggactcggcgtgcttcctgtcgatgaagcggccgatgcgcaatggcaaaca
tggttggatgcactcgctgccgatggccgcgccagttgtcttgccttgaacggcgcgccc
gcgctgtggatcagtgccgcgcgcatcgactggttcctaccgctgtatcctgacgcgtct
gcgcaaccgccggtacaggcgccggaagattgccgcgttgccgaatgggagcgcgagtgg
gccgtacgcgaagtgctgcgcgggcggctagctgccgtcggcccggcacaggtgcccgcg
ttgtccaaggcgttgcagttgccggaagacgcgatcgtgctcgcactggaggcattgcag
cgcgagggctatgtcatggctgggcacttcagcgcacagacgcagtcggaagaatggtgc
gagcgccatctgctggcgcgcatccatcgttacaccctggggcgattgcgccgcgagatc
gaaccagtgtcgcaacgcgattacgcgcgcttcctcttcgagtggcagcacgtcgacagc
agtagccgggtggcaggaccggatgcattggccggtgtggtcgggcagttggaaggcttc
gaggcacctgctgtcctgtgggaaagcgagctgctgcccgtacgcgtgcgcgactatcaa
ccagcgtggttggacgagctgtgcaccgccgggcgcacagtgtgggcgcgcttgcggccc
ggcggtggttgcagtggtgccgcgctgcgtgccaccccgatcgtgctgctgccgcgtcgc
gaagcgcagcggtggagtagcctgacacgtcatgccaatgacgaaccgttaggcgcgcgc
gcgcaacgtgtggtggcggtgttgcagcagcaaggcgcgctgttcttcgacgaaattgcc
gatgcggcccgcttgatgagcattgagttggaagatgcgttgggcgagctggtgatgcgc
ggcctcgcgcattgcgacagttacgctgggctacgcgcgctgctggtgcctgcctccaag
cgcccgtcggcattgtcgcggcaccgtcgtcgcgcgagtgcgctgggcattcgcgatgcc
ggacgctgggctccggtacgcgcgcttccggaatcgccatcggccgaagccagcgaacgc
catcaggacacgctcgagcacgtcgctcggaccttgctgcgccgttatggcgtggtgtgt
tggcggctgctggcacgtgaggctgcgtggttgccgccgtggcgcgaattgctgcgcatg
tatcaacgtctggaagcacgcggcgacattcgtggcgggcgttttatcgccggcctgtct
ggtgaacagttcgcgttgccggacgcgattgccgcactgcgccgcgtgcgcgcacaggca
ttgccgcagcagtgggtatgcgtaagtgcgagtgacccaagcaatctattgggcagcctg
ctgccgggcgaacgcgtcgcgcgcgtgccgggaaatcgcgtcgcttatctcgatggcatg
ccgatggcagtgtgggcggcagatcgcttccagccgctgcaagaacttaccatcgagcag
gccgatcaggcgctgggcttgctgcagcgtgggccaggcgcagccgagcagacgcccatg
cagcaatggctggctcagccgtccggcggcatcgggcgtgtgccggtcgcacggggaagc
ggacgcgacaaatag

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