Xanthomonas fragariae: BER92_06940
Help
Entry
BER92_06940 CDS
T04667
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xfr
Xanthomonas fragariae
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xfr03016
]
BER92_06940
Enzymes [BR:
xfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BER92_06940
Transfer RNA biogenesis [BR:
xfr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BER92_06940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AOD14517
UniProt:
A0A1Y6HD91
LinkDB
All DBs
Position
complement(1526560..1527654)
Genome browser
AA seq
364 aa
AA seq
DB search
MPHWITHPSELTERLQASRPYRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM
NEALKEWLTATDIVKVMHSASEDLVTFKCACEVLPRPLFDTQIAAALAGIGGGMGYQKLV
QEVTGTLLTKGETRSDWMRRPLSHAQLEYAADDVRYLFAIHDELTRRLTEQDRLGWLAED
AERLLATVEQDDGERWPHVSLRTAQFLEPAAQRRLLRLLRWRDLQARQRDRPRSWILDNE
LASQLARFPPADLDALLRQFDKFPKAPRKLASAVWEVLNTPLPDEDGAPLAQAATDGSKA
VLKRLQDTVTQRSRELGLPDGLLASRRHLETLIEQRSWPAALGQWRREVLEAQVMPLLDD
AAAS
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
gtgccccattggatcactcacccctccgagctgaccgaacgcctacaggcctcgcgtccc
taccgcattggcctggataccgagttcattcgcgaacgcacctactggccgcagttggcg
ctggtgcagatggccatcggcgaggagatcctgctgatcgacccgctgattccaggcatg
aacgaggcgctcaaggagtggttgaccgccacggatatcgtcaaggtaatgcacagtgcc
agcgaggatctggtcaccttcaaatgtgcgtgcgaggtgttgccgcggccgttgttcgat
acccagatcgctgcggcgctggccggtatcggcggtggcatgggctatcaaaagctggtg
caggaagtcaccggcaccttgctgaccaagggtgagacgcgctctgactggatgcgccgc
ccgttgtcgcatgcgcagttggaatacgccgccgacgacgtgcgctatctgtttgcaatc
cacgacgaactcacccgccgcctgaccgagcaggaccgcttgggctggttggccgaagat
gccgagcgcctgctcgccacggtcgagcaggacgatggcgagcgttggccacatgtgagc
ctgcgcactgcgcaatttctggagccggccgcgcaacgccggctgctgcgcttgctgcgt
tggcgcgatctgcaggcgcggcaacgcgaccgcccgcgcagttggatcctggacaacgaa
ctggccagccagttggcacgcttcccacccgccgatctggacgccctgttgcgccagttc
gacaagtttcccaaggcaccgcgcaagctcgcttccgcggtgtgggaggtgctcaatacg
ccgcttcccgacgaagacggcgcaccgttggcgcaggctgccactgacggcagcaaggca
gtgctcaagcgtctgcaggatacggtcacgcaacgcagccgcgagctcggtttgccggac
ggtctgctggcctcgcgccggcacctggaaaccttgatcgaacaacgcagctggccggcc
gcgctcggccaatggcgtcgcgaggtgctggaagcgcaggtgatgccgttgctggatgac
gctgcggcgtcgtga
DBGET
integrated database retrieval system
