Xanthomonas fragariae: BER92_07345
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Entry
BER92_07345 CDS
T04667
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BER92_07345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfr03019
]
BER92_07345
03016 Transfer RNA biogenesis [BR:
xfr03016
]
BER92_07345
Enzymes [BR:
xfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BER92_07345
Messenger RNA biogenesis [BR:
xfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BER92_07345
Transfer RNA biogenesis [BR:
xfr03016
]
Prokaryotic type
tRNA degradation factors
BER92_07345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
KH_PNO1_2nd
DUF7680
BAG6
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
AOD14587
UniProt:
A0A1Y6GV33
LinkDB
All DBs
Position
1611583..1613697
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTIAELKDSQLELVVAG
TANAVLMVESEAALLSEEVMLGAVTFGHRELQKVINAINELTVEAGTKPSSWVAPVKNTA
LINALKEAVGTQLADAFQVRDKLQRRDAISAIKKDVLDSLAGRVASEGWSAAELSKEFGE
LEYHTMRDSVLETKVRIDGRALDTVRPIDVQAGVLPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEDDRFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctcgagaccggc
gaagtcgctcgccaggcgagcggcgcggtcatcgtcaagatggatgacaccgtactgctg
gtcaccgccgtcgccgcaaagaccgcgcgcgaaggtcaggacttcttcccactgaccgtt
gattatcaggagaagttctatgccggcggccgcatcccaggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgctgatctctcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactataagaacgaagtacagattatcgcgaccgtgatgtcgatgaac
cccgacatcgacggcgatatcgccgcgctgatcggtgcatcggctgcgctgtcgttggcc
ggtacgcccttcaacggcccgatcggtgccgccaaggtaggctacaagaacggtgagtac
atcctcaacccgaccatcgccgagctgaaggattcgcagctggagctggtggttgccggc
accgcgaacgccgtgctgatggtggagtcggaagcggcgctgctgtccgaagaagtgatg
ctgggcgcggtcaccttcggccatcgcgaactgcagaaagtcatcaacgcgatcaacgag
ctgaccgtcgaagccggcaccaagcccagcagctgggttgcgcctgtcaagaacaccgcg
ctgatcaacgcgctcaaagaagccgtcggcacacagctggcagatgctttccaggtgcgc
gacaagttgcagcgtcgcgacgcgatctccgcgatcaagaaagacgtgctggactcgctg
gccggccgtgttgcctccgaaggctggagcgctgctgagttgtcgaaggaatttggcgag
ctggaatatcacaccatgcgcgactcggtcctagagaccaaggtgcgtatcgatggccgt
gcactagataccgtgcgtccgatcgatgtgcaggccggcgtgttgccacgtacccatggc
tcggcactgttcacccgcggcgaaacgcaggctattgtggttaccacgctgggcaccgcc
cgcgacggccaagtgatcgacgcggtcagcggcgagtacaaggaaaatttcctgttccat
tacaacttccctccgtactcggtaggcgagtgtggtcgtttcggtgcaccgaagcgtcgt
gaaatcggccatggccgtctggccaagcgcggcgtgctagccgtgatgccgagcctggaa
gaattcccgtacaccattcgcgtggtctcggagatcaccgagtccaatggttcttcctcg
atggcatcggtctgcggcagctcgctggcgctgatggacgccggtgtgccgatcaaggcg
ccggtggcaggtatcgccatgggcctggtgaaggaagatgatcgcttcgtggtgctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacataaagatcgagggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggcgggccgtctgcacatcctcggcgagatggcgcat
gccctgaccacgccgcgtctggagctgagcgattacgcgccgcgtctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggcgatc
accaaggaaaccggcacgcagatcgacatccaggacgacggtacgatcatcatcgcctcg
gtcaatgccatcgccgcacaagctgcgaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaagtcgccaagatcatggacttcggcgcgttcgtc
acgatcctgccgggcaaggacggtctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggttggcgacaagctgaaggaaggcgatctggtccgcgtcaaggtactggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgagggcgtgccg
gcttcggccgagtaa
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