Xanthomonas fragariae: BER92_09725
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Entry
BER92_09725 CDS
T04667
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BER92_09725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfr03019
]
BER92_09725
03009 Ribosome biogenesis [BR:
xfr03009
]
BER92_09725
Enzymes [BR:
xfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BER92_09725
Messenger RNA biogenesis [BR:
xfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BER92_09725
Ribosome biogenesis [BR:
xfr03009
]
Prokaryotic type
rRNA processing factors
BER92_09725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AOD14972
LinkDB
All DBs
Position
2132215..2135874
Genome browser
AA seq
1219 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHTKSTIRELLREGQEIVVQVDKEERGSKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFI
KQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCEGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTNAQLNIPVAPAVTSIKPSQPAPVREEAPA
SVAAAPAPAAVVALPLPAPVTGVVSWLKRIFGGVEPVAPAPEPPQRPRQNDAGRGNRNER
GGQRRDGRDARNGGNSGNSGNQQRGNGGNGGNGNGANKERRDERRQPSNSQSAQNGAQVQ
QQAQVAKPPRNEAQAPKQQQQQQTQKQKQASRSLRAPAQHDGASSEKQQRPARQDEGTTA
AQTLTSTAATATQSSVVGAIAETVAPVTTQVPAEATQAHPADVIVSESPADRSIDATADG
QTTDAPGDDSTNGEGGSRRRRGRRGGRRRRRGAGTNGEGGTGVDGLETDDLDGDAEGDLD
GDNEHDGDAATQTQKPAAPRAGQPEFDFDDEAPAPCAKPEPSASSAVKPRPVPKERLETQ
TDADTYSTTAPVSNATPSFEQQAAAPGAAAADRARSDATVLAAASAASTPVTSPVSDTTP
APVAAPAPIAHQAPVATSTPAAVLSPAPSTPVTARDAAATLAPAAVPTAPIPATKPVEHT
GTGTAATAAEPAEVSQERAVHATASTSAAQAEPVKADTAPIAVDVQRPVATPSNVPAAQA
TVVTVNASHAEPTSAASPAADIAVTSTTTEPQRTQAADTAPIAPVKPYAPVQTKLLDVLA
TETAAAPPSAPAETLAPFKASEQSATVASVTPASVQEQAADKPTSTVVVSEVVKPADPAS
PAVDTKKQEEDVNKPRHDH
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctataag
ggccgtatcacccggctcgagccctctctcgaggcggcgttcgtggactatggcgctgag
cgtcatggcttcctgccgttgaaggagatctcccgcgattatttccaggctggcgtcgac
cacaccaagtcgaccatccgcgagctgttgcgcgaaggccaggaaatcgtggtgcaggtc
gataaggaagaacggggcagcaagggcgctgccctgaccacgttcatctcgctggccggc
cgctacatggtcctgatgcccaattcaccgagcgccggtggcgtttcgcgccggattgaa
ggcgaagaccgcgcggcgctgaaggaagcgctcgacaagctcgacattccggacgacatg
ggcgtgatcattcgcactgccggtgtcggtcgtgacgccgaagaactgcagtgggatctg
gattatctgctgcagacctggaaggcgattgccgaggctgcgctgagcaagccggccgca
ttcctgatttaccaggaatcgcgcctgatcatccgcgccctgcgcgactacttgcgcgcc
gacgtcggcgagatcctggtcgatacgccagagctgtatgccgacgcccaagagttcata
aagcaagtgatgccgcagagcttgcgcaagctcaagcattacaccgatgacattccgctg
ttcaatcgctttcaaatcgagtcacagatcgaaggcgcctacgaacgcaatgtccgcctg
ccttcgggtggctcgatcgtggtcgaccagaccgaggcgctgaccgccgtcgacgtgaac
tcatcgcgagccactaagggcagcgatatcgaagaaaccgccttccagaccaacttggaa
gcagccgaagaagtcgcgcgtcagctgcgcttgcgcgatcttggcggcttggtggtgatc
gacttcatcgacatggcgtcgaccaagcaccagcgcgaagtcgaaaacaaactgcagaac
gcgctcaagtacgatcgcgcacgcgtgcagctgggccgtatttcgcgcttcggcctgatg
gaaatgagtcgccagcgcctgcgcccaagtctgggtgaatccagccagatcgtgtgcccg
cgttgcgaaggccatggccgcatgcgcagcgtcgaatcgctgtcgctgtcgatcatccgc
gtggccgaagagcacgccatgaaggaaaataccgggcaagtactggtccaggcaccggtg
gagatcgccaactacctactcaacgaaaagcgcagcgcgctgcgtgagatcgaaaatcgg
catgcctcgccgattatcatcgtcgccgacgagcaactgcacaccccgcactacgaagtc
acgcgcttgcgtgaaaacgagctgggcgaggacagcggcaagccgagctaccagcgcggc
accccgcgcaagttgccggtgcacgcgctgaccaacgcgcagttgaatattccggttgcc
ccggcggtgacttcgatcaagccgagccagccggctccggtgcgtgaggaggcccctgcc
tcggtcgctgcagcacctgcgccggctgcggtcgtcgcattgccactgcctgcgccggtg
accggcgtggtcagttggttgaagcgcatcttcggtggtgtcgagccggtcgctcccgcg
cctgaaccgccccagcgcccgcgccagaacgatgccggccgtggcaaccgtaacgagcga
ggcggtcagcgccgcgatggtcgcgatgcacggaatggcggcaatagcggcaatagcggc
aatcagcagcgtggcaatggcggtaacggcggcaatggcaacggtgccaacaaggagcgt
cgtgacgagcgtcgccagccgagcaacagccagagtgcgcaaaatggcgcccaggtacag
cagcaggcgcaggtcgccaagccaccgcgcaatgaggcgcaggcaccaaagcagcagcaa
cagcagcaaactcagaagcagaagcaggcgtcgcgttcgctgcgtgcacctgcacagcac
gatggcgcgtcgtccgagaagcagcagcgtcctgcgcgccaggacgaaggcactacagcg
gcacagacgctgacctcgactgctgcaacggcaacacaatctagcgtggttggggcaata
gccgagactgtggctccggtgacgacgcaagttccagcggaagcgacccaggcgcatccg
gctgatgtgatcgtgagcgaatcgcctgccgaccgcagcatcgacgcgactgcggatggt
cagaccacggatgccccgggcgatgattcgaccaatggcgaaggtggaagccgtcgtcgt
cgcggtcgtcgcggcggacgtcgtcgtcgtcgcggtgctggcacaaatggtgaaggcggt
accggcgtcgatggtctggaaacggacgatctggacggcgatgccgaaggcgatctcgac
ggcgacaacgagcacgacggtgacgccgccacgcagacacagaagcctgccgcaccgcgg
gccggccagccggagttcgacttcgacgacgaggcgcctgccccgtgtgccaagcccgag
cccagcgcttcgtcagcggtgaagccgcgtccggttccgaaggaacgtttggagacgcaa
accgatgccgatacgtactcgaccaccgcaccggtctccaacgccacgccgtctttcgaa
cagcaggccgcggctcccggtgccgcagcagctgatagggcacgtagcgatgcgacagta
ctagctgcagcatctgctgcatcgacgcctgttacttcccccgtgtcggatacaactccg
gctccggttgcagctccggctccgatcgctcatcaggcgccggttgccacttcgactccg
gcggccgtgttgagtccagcaccttcgactccagtgacagcacgtgatgcggcagcgacg
ttggctcctgcagccgtgcctacagctcccattcctgccaccaagccggtcgagcatact
ggcactggtacagctgcaaccgcggcggaaccggctgaagtcagtcaagaacgcgctgta
catgccactgcttcgacctctgcagcgcaagccgagccggtaaaagccgacacggcgccg
attgccgttgacgtgcagaggcctgtagcaacgccgtcgaatgtcccggctgcgcaggcc
accgtggtgaccgtcaatgcttcgcatgcagagcccaccagcgctgcgagccccgccgcg
gatatcgcagtgacgtccacaacaaccgagccgcagcggacccaggctgcggataccgca
ccgattgctccggtgaagccatacgcccctgtgcaaacgaagttgctcgatgtgctggct
accgaaaccgcagcagccccgccctcggcacctgccgagacactggcgcctttcaaggct
tccgagcagtcagcaacggtggcatctgtcacgcccgcaagcgtccaggaacaggcagcc
gacaagccgacgtccacagtcgtcgtctccgaagtagtcaaaccggcggacccggcaagt
cctgcggtcgacactaaaaagcaagaagaagacgtcaataagccgcgtcacgatcactga
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