Xanthomonas fragariae: BER92_13075
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Entry
BER92_13075 CDS
T04667
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BER92_13075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfr03019
]
BER92_13075
03009 Ribosome biogenesis [BR:
xfr03009
]
BER92_13075
Enzymes [BR:
xfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BER92_13075
Messenger RNA biogenesis [BR:
xfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BER92_13075
Ribosome biogenesis [BR:
xfr03009
]
Prokaryotic type
rRNA helicases
BER92_13075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
AAA_19
Flavi_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AOD15485
UniProt:
A0A1Y6H4V6
LinkDB
All DBs
Position
complement(2865461..2867383)
Genome browser
AA seq
640 aa
AA seq
DB search
MTQESPAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLSQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKAIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRAGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYETENNVP
AIDIAAAMARLLQGDSPLLLTPPVRGAREEFAPRERNERGDRGERPRFESKFERGPRAGG
QRAVRPPRAERPAFADDGGAERPRRDPVAPRGEPEFGMESYRIDVGHTHGVKPANIVGAI
ANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAAS
PSKPHFPRGGKPSGRPNGPGRPMDRAGAAHRKAAPKPRGE
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatctcccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaggcagtagccaacgttggctacgagtccccgtcgccgatccaggctgccaccatt
cccgcgctgctggccggccgcgacgtactcggccaggcccagaccggtaccggcaagacc
gctgcgttcgcgttgccggttctgtccaatgccgacctcagccagctcaagccgcaagcg
ctggtgctggcaccgacccgcgagctggccatccaggttgccgaggcgttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctacggtggccagccctatgcacag
cagctgagcgcgctcaagcgcggcgtgcatgtcgtggttggtacgcccggccgggtgatc
gatcacctggatcgcggcacgctcgatctgtcccaactcaagacgctggtattggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgttgaagcggtgctcaaaaagttg
ccggaaaagcgccaggtggcgctgttctcggcaaccatgccgccggcgatccggcgtatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagaccacgacctcg
gccaacatccgccagcgctactggtgggtgagcgggctgcacaagctggatgcgttgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgtaccaaagccggt
accgaagagctggcccagaagctgcaggcgcgcggcctggccgcggccgccatcaatggc
gacatgcagcaggccgcccgcgagaaggccatcgcccagctcaaggacggcaagctggac
atcctggttgccaccgacgtggccgcgcgcggtctggacgtcgagcgcgtcagccacgtg
ctgaattacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggtcgcaccggg
cgtgccggccgcgccggcgatgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgttcgatcgagcgcgccacccgccagccgatcgaagaaatgcagctgccgagcgtggat
gcagtcaacgacacgcgcgtggcgcgtttcatgacccgcatcaccgagacgctggccggt
ggccagatcgagatgtatcgcgacctgctgcagcgctacgagaccgaaaacaacgtgccg
gcgatcgatatcgccgcggccatggccaggttgctgcaaggcgactcgccgctcctgctg
actccaccggtacgcggtgcgcgcgaagaatttgcgccgcgtgagcgcaacgagcgtggt
gatcgtggcgagcgtccgcgtttcgagtccaagttcgagcgtggcccgcgtgccggcggc
cagcgcgctgtgcgtccgccgcgtgccgagcgtccggcgtttgccgacgacggcggagcc
gagcgtcctcgccgcgacccggtcgctccgcggggcgagccggagttcggcatggagagc
taccgcatcgacgtaggccacacccacggcgtgaagccggccaatatcgtcggcgcgatc
gccaacgaagccggtctggaaagccgctacatcggccggatcgacatccaggacgactac
tcgattctggatctgccggccgacatgccgcgcgaactgctgacgcacctgaagaaggtc
tgggtgtcaggtcagcagctgaacatgcgtaagctggaagaaggcgaggcggcggcgtcg
ccatccaagccgcacttcccgcgtggcggcaagccgtccggtcgtccgaacggcccgggc
cgtccgatggaccgcgccggcgcagcgcatcgcaaggcggcgcccaagccacgcggcgag
taa
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