Xanthomonas fragariae: BER92_13235
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Entry
BER92_13235 CDS
T04667
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BER92_13235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfr03400
]
BER92_13235
Enzymes [BR:
xfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BER92_13235
DNA repair and recombination proteins [BR:
xfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BER92_13235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_16
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOD15506
UniProt:
A0A1Y6H2J6
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All DBs
Position
2899682..2903149
Genome browser
AA seq
1155 aa
AA seq
DB search
MPSPTFPSPPLPKSGQLRVYWRAPSSPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEA
DLHALLSEQSALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPSLSRGVVIVPVQTL
MQQLAPLSYIVGGSFDLKVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDISVERVLACLRE
RFDVDTRRSALYQDLKSGIAPSGIEYYLPMFFANTATLFDYLDKRVLPLIATGVSNAADA
FWTQAQHRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWASDHARIDQATALG
DQPLPPLPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPEVVAD
VPAFLAADKLRFGITVAPLEDGFALDNPQIAVLTERQLFPERANQPRRTRRVGREPEAII
RDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYE
PFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTH
RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSE
LVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAAKRLEAIASMDELGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGDEVRGAEVELHVAS
LIPEDYLPDVHTRLTLYKRISSARDADGLRELQVEMIDRFGLLPDPVKHLFAIAELKLQA
NALGVRKLDLGENGGRLVFAAKPSIDAMTIIQMIQKQPKIYTMDGPDKLRIKLPLPEGAD
RFNAARGLLAALAPG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcctaccttcccctctccgccgctgcccaagtccggccagctccgcgtctac
tggcgcgctccttcctctccgacagcgctggcctggtcgattgcgcgggcagccgaggcg
cacgccggcccgctgctggtgattgcacgcgacaaccagagcgcgcatcagatcgaagcc
gatctgcatgccctgctcagcgaacagtccgccctgccggtggtgccgtttcccgattgg
gaaaccctgccctacgaccagttcagcccgcatcctgaaatcatcagccagcgcttggcc
gccctgcatcgcctgccctcgctgagccgcggcgtggtgattgtgccggtgcagacgttg
atgcagcagctggcgccgttgagctacatcgtcggtggcagctttgatctcaaggtcggc
cagcgactggatctggacgcagaaaaacgccgtctggaaagcgccggctaccgcaacgtg
ccgcaggtaatggacccgggcgatttcgcggtgcgcggcggtttgctggacgtgttcccg
atgggtgcggacacgccgctgcgcatcgagttgctggacgaagatatcgactcgatccgc
gcgttcgaccccgaatcgcagcgttcgctcgacaaggtcgacgcagtcaagatgttgccc
ggccgcgaagtgccgatggacgatatcagcgtggagcgcgtactggcgtgtctacgcgaa
cgcttcgatgtggatacccggcgcagcgcgctgtatcaggatctgaaatccggcatcgcc
ccgtcgggcatcgagtactacctgccgatgttcttcgccaataccgccaccttgttcgat
tatctggacaagcgcgtgttgccgttgatcgccaccggtgtgtccaatgcggccgatgcg
ttctggacccaggcacagcatcgctacgagcagcgccgccacgatgtggaacgcccgctg
ctgccgccggacgagttgtatcaatcgcccgatgcactgcgtgagcggctcaacaagctg
gcgcgcatcgaagtgtgggcaagcgatcatgcacgcatcgaccaagccaccgcactcggc
gaccaaccattgccgccgctgccggttgccgcaaaagacgcacccgccggacaggcgctg
gcatcgttcctgggccattatccgggccgcgtgctggtggctgccgattcggccggccgc
cgcgaagccttgatggaagtgttggccgccgcgcaactgaagcctgaagtggtcgccgat
gtgccggccttcctggctgcggacaagctgcgtttcggcattacggtggcaccgttggaa
gacgggttcgccctggataatccgcagattgcggtattgaccgagcgccagctgtttcct
gagcgggccaatcagccgcgccgcacccgccgggttgggcgcgagccggaagcgatcatc
cgcgatctgggcgagctgtccgaaggcgcgccgatagtgcacgaggaccacggtgtgggc
cgctaccgcggactgatcgtgttagatgccggcggcatgcccggcgagttcctcgaaatc
gaatacgccaagggcgaccggctgtatgtaccggtggcgcaactgcatctgatcagccgc
tactccggcgcctcggccgacaccgcgccgctgcattcgctcggtggcgagcagtggacc
aaggccaagcgcaaggcggccgaaaaagtccgcgacgtcgcggccgagttgttggaaatc
caggcacgccgacgtgcgcgtgcaggtttggcgctgcaggtggaccgggcaatgtacgag
ccgttcgcggccggtttcccgttcgaagagaccaccgatcagttggccgccatcgatgcg
acattgcgcgatctgggcagcagccagccgatggaccgtgtggtgtgcggtgacgtcggc
ttcggcaagaccgaggttgcggtgcgtgcggcattcgcggcggccagtgccggcaagcag
gtcgcggtactggtgccgaccacactgctggccgagcagcattaccgcaatttccgcgac
cgcttcgccgattacccgatgaaggtggaagtgctgtcgcgcttcaaaagcaccaaggaa
atcaaggccgaattggaaaaggtcgccagcggcgatatcgacgtgatcatcggcacgcat
cggctgctgcagccggacgtgaagttcaaggatctcggcctggtcgtcgtcgacgaagaa
cagcgcttcggcgtgcggcaaaaagaagcgctcaaagcgatgcgtgccaacgtgcatctg
ctcacgctcactgccacgccgatcccccgcacgctcaatatggccatggccgggctgcgc
gatctgtcgatcattgccaccccgccgccgaaccggcttgccgtgcagacgtttatcact
gcgtgggataacacgctgctgcgcgaggccttccagcgcgagctcagccgaggtggccag
ctgtatttcctgcataatgatgtggagagcatcgtgcgcatgcagcgcgatctgtccgag
ctggtgccggaagcacgtatcggcatcgcgcatgggcagatgcccgagcgcgagctggaa
cgggtgatgctggacttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatc
gaatcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttc
ggtctggcccagctgcatcagctgcgtgggcgcgtcggccggtcacatcaccgcgcctac
gcgtatctggtggtgccggatcgtcgctcgatgacctccgatgcggccaagcgtctggaa
gcgatcgcgtcgatggacgagctcggcgccggcttcacgttggccacgcacgatctggaa
atccgcggtgccggtgagctgctgggcgaagaccagagcgggcagatggccgaagtcggt
ttcagcctctacaccgaactactggaacgcgcagtgcgcagcatccgccagggcaagctg
cccgatctggatgccggcgatgaagtgcgcggcgccgaagtcgaactgcatgtggcctcg
ctgatccccgaagattatctgcccgacgtgcatacgcgcctgacgctgtacaagcgtatc
tccagcgcacgcgatgccgatggcttgcgcgaattgcaggtggaaatgatcgaccgcttc
ggtttgctgccggacccggtcaagcatctgtttgcgattgccgaactcaagctgcaggcc
aacgcattgggcgtgcgcaagctggatctgggcgaaaacggcgggcgtctggtattcgca
gccaagccgtcgatcgatgcgatgacaatcatccagatgatccagaagcagccgaaaatc
tacacgatggatggtccggacaaactgcgcatcaaattgccgttgccggaaggcgccgac
cgtttcaatgccgcgcgcggattattggcggcgttggcgccgggctga
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