Xanthomonas fragariae: BER92_15740
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Entry
BER92_15740 CDS
T04667
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xfr
Xanthomonas fragariae
Pathway
xfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BER92_15740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfr03019
]
BER92_15740
Enzymes [BR:
xfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BER92_15740
Messenger RNA biogenesis [BR:
xfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BER92_15740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AOD15886
UniProt:
A0A1Y6H681
LinkDB
All DBs
Position
3441453..3442847
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AA seq
464 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNAPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGERAPRKSHARRPHGDAPRYAHA
HAGPKKPGGQRSSGPRQAGVAAGAGAGRRDGGRGGSGRPASCGV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccactgcaatccagcagcaagcgattccgctggtgttggcaggtcatgac
ctgttggccggcgcgcagaccggtaccggcaaaaccgccgcgttcggcctgccgctgctg
cagcatctgggcacctcgccgcagccggtcaacgccccgcgcaagccccgcgcgcttatc
ctgacccccacccgcgagctggccacccaggtacatgacagcctgcgcggctacagcaaa
tacctgcgtatcccgagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
gcgctgcgtcgtggcgtggacctgctgatcgcctgtccgggccgcctcatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgatcgc
atgctcgacatgggctttttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctcggccacgttcgaagagaacattaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcacacctagcaacaccgtggccgagagc
attacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgatctgctgctgcacctg
ttggcgcaggacagccgcgagcagaccctggtgtttgcgcgtaccaagcatggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcagcgatccacggcaacaaa
agtcaaggtcagcgcatgcgtgccttgagcgacttcaaggccggccgcgtgactgtgctg
gtggccaccgatatcgctgcgcgcggtatcgatatcgaccagctgccaaaggtcatcaac
tatgacctgccgatggtggctgaggattatgtgcaccgcatcggccgcaccggccgtaac
ggctcgaccggcgaagcgatctcgctggtggcgcaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgatgtcgaaattcgcgacgtaccgggctacgagccgcag
accccgatccgttggggcaacagtgcgccgggccgtgccgaacagccgggtggcgagcgc
gctccgcgcaagagccacgcccgtcgtccgcatggcgatgcaccgcgttatgcgcatgca
catgccggcccgaagaagccgggtggtcagcgcagcagcgggccgcgtcaggccggtgtt
gccgccggtgcgggtgcaggccgtcgcgatggtgggcgtggcggcagtggccggccggcc
agctgcggcgtctga
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integrated database retrieval system
