Xylella fastidiosa subsp. sandyi Ann-1: D934_00185
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Entry
D934_00185 CDS
T03318
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xfs
Xylella fastidiosa subsp. sandyi Ann-1
Pathway
xfs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xfs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D934_00185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfs03021
]
D934_00185
03400 DNA repair and recombination proteins [BR:
xfs03400
]
D934_00185
Enzymes [BR:
xfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D934_00185
Transcription machinery [BR:
xfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D934_00185
DNA repair and recombination proteins [BR:
xfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D934_00185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIC09128
UniProt:
A0A060H0T6
LinkDB
All DBs
Position
complement(46580..50803)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIGLASPALIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGCIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADGFDASM
GAEAVYELLRMIDLQSEMARLREEIVVTGSETKLKRLTKRIKLIEAFIESGNRPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLCRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSARSVIIVGPN
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKGAKKLVEREEAEVWDILEEVISEHP
VVLNRAPTLHRQGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSELKRAYDNS
VVELHAKVKVRITEIETDDQGLRNKASSIVDTTVGRALLSEILPEGLPFVLVNTEMTKKN
ISRLINSSYRMLGLKETVVFADKLMYTGYAYATRAGVSICIDDMLIPIEKKEILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTERVVNADGEIVDQKSMN
SLYIMADSGARGSPQQIRQLAAMRGLMVRPDGSIIETPIKANFREGLSVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLCVVQLDCGTAGGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVLLPGNDDEPIVTRSTLLDEQWVAKLEEAGVQSVKVRSPITCESPFGVCALCY
GRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTALSAAAIDNITVKTSGSVK
FTNLKYVEHGNGTLVAVSRSGEISVLDTHGRERERYKLPYGATINVKDMAEVKSGQILAN
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDDLTGLSSREIADLKRRGSQGKDLRPLVR
IVDKKGNDLTIPGTDLSAQYLLPPRSIVNLQDGAPVGIGDVVAKIPQEASKTRDITGGLP
RVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLIIKDADGSEHEELIPKYRQIIVFE
GEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIDENAKLIARNELPAKYNPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGQTYHSQRRYSSVGLTESE
METLVGRSTSSGTEVTSPSKDAIPLGG
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctactcaatctttttaatcagcagcgccagacattggatttcgatgctatc
aagattggccttgcctcgcctgccttgattagatcttggtcgttcggtgaagtgaagaag
ccggaaacaatcaactaccgcacttttaagcctgagcgtgatggtttgttttgtgctgct
atctttggtcctatcaaggactatgaatgtttatgtggcaaatataagcgcatgaagcat
cgaggggtggtctgtgagaaatgcggtaccgaggtgactttagccaaagtacgccgtgag
cgtatgggttgcattgagctagcttcgcctgttgctcatatttggttcttaaaatcgcta
ccttcacgcattggattgatgctggacatgactttacgtgatatcgagcgtgtcttgtac
ttcgaagcctatgtagtgactgagccgggtctaactcctttagagcggcgtcagctccta
accgaagaacaatatttgcaagcccgtcaagaacatgctgatggcttcgatgcttctatg
ggagccgaagctgtatacgaactcttgcgaatgattgacttgcaatcggagatggctcgt
ttgcgtgaggaaatcgttgtcactggttctgagactaagctgaaacgtttgactaaacgt
attaagctgattgaagcgtttatcgaatctggcaatcgtccggaatggatgattttgacc
gtgttgcctgtactacccccagacctgcgtccgctggtgccgttggacggtggtcgcttc
gcaacctctgatcttaatgacctgtaccgtcgagtcattaatcgtaacaatcgtctgtgc
cgcttattggagttaagtgctcctgacatcatcgtgcgcaacgagaagcgcatgttgcaa
gaatcagtcgacgcgttgctagacaacggtcgtcgcgggcgtgctattactggtactaat
aagcgtcccttaaaatcgttagcggacatgattaagggtaaacagggtcgttttcgccaa
aatttgcttggaaagcgtgtcgattactctgctcgttcagtgattatcgtaggccctaat
cttcggttacaccaatgtggattaccgaaaaaaatggcgcttgagctattcaaacctttt
gtgtttgctaagctgcagcgtcgcggcttggctactacgattaagggagctaaaaaactg
gttgagcgtgaagaagccgaggtctgggatattcttgaagaggttatttctgagcatcct
gtggtattgaatcgtgcgccaactttacatcgccagggtattcaagcctttgagccagtt
ttaattgaaggtaaagcgattcagttacatccgttagtttgtactgcattcaatgcagat
ttcgatggcgatcagatggccgtgcatgtgcctctttcgctcgaagctcagcttgaagcg
cgtgcgttgatgatgtctactaacaacatactgtctccagcgaatggtgagccgatcatc
gtaccatcacaggatgttgtacttggcttgtactacatgagccgtgcacttgaaaataag
aagggcgaagggatggtgttcgccaataccagcgagctgaaacgtgcttacgacaatagc
gttgttgaattgcatgctaaggtgaaggttcgtattacagagatagagactgatgatcaa
gggctgcgtaacaaggcttcttcgattgtagatactacggtaggtcgtgcattattgagt
gagattcttccagaaggtttgccgtttgttcttgtcaataccgaaatgactaaaaagaac
atttcgaggttgattaattcaagttatcgcatgcttggcttgaaggaaactgttgtattt
gcagataaattgatgtacacgggttatgcctatgcgacacgtgccggtgtgtcaatctgt
attgatgacatgctgattcctatcgaaaagaaagaaatattgggtgaagctgagcaagaa
gtgctcgagattcaggagcagtatcaatccggattggttaccgctggcgagcgttataac
aaagtggttgatatttggtcccgtactaatgaacggattgccaaggcaatgatggatacc
atcggcactgagagagtggttaacgccgatggtgaaatcgttgatcagaagtcgatgaat
tcgctgtatatcatggctgattctggcgcgcgcggtagcccgcagcagattcgccaatta
gctgctatgcgtggtctaatggtacgtcctgatggctcgatcattgagacacctatcaaa
gctaactttcgtgaaggtttgagtgtccaggaatatttcaactctacgcatggtgctcgt
aaaggtttggctgatactgcattgaagacggcgaactctggttacctgactcgccgtttg
gttgatgtcactcaagatttatgtgttgtacagcttgattgcggcactgctggtggatta
actatgaccccgatcgttgaaggtggagatgttgttgagccacttaaggatcgcgtgtta
ggacgtgttgttgctgaggatgtattgctgcctggtaatgatgatgagcccattgtaact
cgtagcaccttgcttgatgagcaatgggtagctaagttggaagaggccggtgtgcagtca
gtgaaggttcgttctcctatcacatgtgagtctccgtttggcgtatgcgccctatgctat
ggtagggatcttgctcgtggtcatttggttaatatgggtgaagcagtaggtgtcattgct
gctcaatcaattggtgaaccaggtacgcagttgacgatgcgtaccttccatattggtggt
accgcgttgagtgcagcagcgatagataacattactgtaaaaactagcggttcggtaaaa
tttactaatctaaagtatgttgagcatggcaatggtactttggttgcggtatctcgttcc
ggagagatttcggttctagatactcacggccgtgagcgtgaacgctacaagttaccttac
ggtgcgactataaatgtcaaggatatggctgaagtcaaatcagggcaaatcttggcaaat
tgggatccccacaatcacccaattgtttctgaagttgcaggttttgtccgttttatcgat
tttgttgatggtgtcactgtcattgagaaaactgatgatctgactggtttatcttcccgt
gagattgctgatctgaagcgccgtggttcccaaggtaaggatcttcgtcctttggtgcgt
atcgttgataaaaaaggtaacgatctgactattcccggtactgatctttcagctcagtat
ttgttgcctccgcgttcgattgttaatcttcaggatggtgctccagttggcatcggtgat
gtggtggctaagattccacaggaggcctccaaaactcgcgatatcactggcggtttgcct
cgagtggcggatctgttcgaagcgcgtaggccgaaagatcctgctattttggctgagcgt
tcaggggtgataagttttggtaaagacaccaaaggtaagcagcgattgattattaaagat
gccgatggaagcgagcacgaagagttgattcctaagtaccgtcaaattattgtgttcgag
ggcgagcatgtcaccaagggggagaccattgtggacggtgagccgagtccacaagatatt
ttgcgtttacttggtatcgagccgttagctgcttacttggttaaagaaatacaggatgtg
tatcgtttgcagggtgtgaagatcaatgataagcatattgaagtcattacacggcaaatg
ttgcgcaaagttgagattgttgatcagggaaacagtaagttcctcaatggtgagcaagtt
gaacgtcagcgtgttatcgatgaaaacgcgaagttaattgcgcgcaatgaattaccagca
aagtacaatccagtgttactaggtattactaaggcttctttggcaacggaatcgttcatt
tccgcagcttctttccaagaaacgacccgtgtcttaactgaggctgcggtacgagggacc
agggataatttgcgtggtttgaaagaaaatgtcatcgttggtcgccttattccggctggt
actggccagacgtatcatagccagcgtcgctatagttctgttggtcttactgagtctgaa
atggaaaccttggttggtcgcagtacctcatctggtacagaagttacttcgccttccaag
gatgcgattcctcttggggggtaa
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integrated database retrieval system
