Xylella fastidiosa subsp. sandyi Ann-1: D934_00475
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Entry
D934_00475 CDS
T03318
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xfs
Xylella fastidiosa subsp. sandyi Ann-1
Pathway
xfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D934_00475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfs03021
]
D934_00475
03019 Messenger RNA biogenesis [BR:
xfs03019
]
D934_00475
Transcription machinery [BR:
xfs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D934_00475
Messenger RNA biogenesis [BR:
xfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D934_00475
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
CBP_BcsO
AAA_25
AAA
Spore_III_AA
OB_RNB
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AIC10905
UniProt:
A0A060H6K5
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All DBs
Position
112964..114658
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AA seq
564 aa
AA seq
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MSDITSSESGSATSHGESEKTVRKIRASKSSVESSQQSVTHQTVQPQTPETEAQRAAHLE
SAPPPSQVMSQTSATTPSVQDSSESAEGYGQQNQRFNNNRRDRFRNRRERNRDRFRDENN
SNGEDGNHEPYMPRPHPSVPEGFPIYSLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDV
IFALLKVLTRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTG
DHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPRKRFRLERADGST
EDITGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPEVHLIVLLIDERPE
EVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLIEHKKDVVILLDSITRLARAY
NNVVPSSGKVLTGGVDAHALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
FKGTGNCELHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDEIA
AIEFVLDKMKNTKSNDEFFGSMKR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgatatcacaagttccgaaagcgggagcgctacctcgcatggcgaaagcgaaaaa
accgtgcgtaaaatccgcgcaagcaagtccagtgtggaaagtagccaacaatccgtgaca
caccaaaccgtacagccacaaacaccagagaccgaagctcaacgtgctgcgcatttggaa
tcagctccccctccctcgcaagtcatgtcccaaacgtctgcaaccactccctccgtacag
gacagcagtgaatcagcagaaggctatgggcaacagaaccagcgattcaataacaacaga
cgggatcgcttccggaaccgacgcgagcgtaatcgtgatcgtttccgcgatgaaaacaat
agcaacggtgaagacggcaaccacgaaccatacatgccacgtccacacccaagcgtgcca
gagggattcccaatatattcgctgagcgatctgaaaaagatgccagcacacaaactgcta
gaaatcgctgagcaactcaacatccacgaaggtgtagcgcgtgcacgcaagcaagatgtg
atctttgcacttctaaaagtactgacccgtcacggcgaaggcgtgtttgctgatggcgtt
ctggaaatccttccagatggttttggctttctgcgcgcagccgaagccagctacttggcc
ggtccagacgatacctatatttcccccagtcaaattcgccgcttcaatctacgcactggt
gatcacctgtcgggccggattcgtttccctaaggacggtgaacggtactttgcattgtca
atcgttgatacgattaatggcgaacctctggaagcttccaaaaataagatcctttttgag
aacctgaccccactgtttccacgcaaacgcttccgtttggaacgcgctgacggctcgaca
gaggatattaccggccgcatccttgatttgatggcaccacaaggcaaggggcaacgtgca
ctaatcgtatcccccccaaaagccggtaaaacgatgctaatgcaacaggtagcaacggcg
atcactaccaatcatccagaagtacacctgattgtattactgattgacgaacgtcctgaa
gaagtgacagaaatgcagcgcaccgttcggggcgaagttatttcctcaacgtttgacgag
ccagctgcacgccatgtacaagtcgccgaaatggtcatcgaacgcgcaaagcgcttaatc
gaacataaaaaggatgtagtcatcctacttgactcaatcacccgtttggcacgtgcctat
aacaacgttgtacccagctcaggcaaggtactcactggtggtgtggatgcacacgcacta
catcgccccaaacgcttcttcggtgcagcacgcaatgtcgaagaaggtggctcgctgacc
atcatcgcaaccgcactcattgataccggcagcaaaatggatgaggtgatctatgaagag
ttcaagggtactggcaactgcgagttacatctaaatcgccgtattgccgagaaacgcgta
tatccggcaattgatatcaaccgttccggtactcgccgtgaggatttattgatcgaatcc
gatctattgcagaaaatttggatccttcgcaaattactgcacccaatggacgagattgca
gcaatcgagtttgtgcttgataaaatgaagaacaccaagtcgaacgacgagttctttggt
tcaatgaagcgctaa
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