Xylella fastidiosa subsp. sandyi Ann-1: D934_02035
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Entry
D934_02035 CDS
T03318
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfs
Xylella fastidiosa subsp. sandyi Ann-1
Pathway
xfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D934_02035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfs03019
]
D934_02035
03009 Ribosome biogenesis [BR:
xfs03009
]
D934_02035
Enzymes [BR:
xfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D934_02035
Messenger RNA biogenesis [BR:
xfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D934_02035
Ribosome biogenesis [BR:
xfs03009
]
Prokaryotic type
rRNA helicases
D934_02035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
AAA_19
CMS1
Cas3-like_C_2
AAA_22
P-loop_SecA
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AIC10994
UniProt:
A0A060H2L5
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All DBs
Position
complement(461541..463370)
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AA seq
609 aa
AA seq
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MSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQ
QLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKL
PASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKR
PQRNAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVL
DLPAEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKSGGAGKFPPKPHHNKS
TKPKPPYSG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccatcttctacgccgctgctgtttgcagatctcggcctctccgatgctgtg
atgcaagccgtcacaaaaatcggctacgaaactccgtcgcccatccaggcggcgaccatc
ccagccttgcttgctgggcgcgatgtgctgggccaagcccagaccggcactgggaagact
gccgcattcgcgctaccgttgctcacacgcaccgttctgaaccaggtcaagccgcaagtg
ctcgtactggcacccacccgcgaactggctatccaagttgccgaagcattccagcgctac
gctgcctcaatctctggcttccgtgtcctacccgtgtacggcggccaatcctatggccaa
caactggccgcactgaaacgtggtgtccatgtgatcgtcggtaccccgggccgggtgatt
gatcacctagagcgcggcaccctggatctatcggaattaaaaacgctggtcctcgacgaa
gccgacgaaatgctgcgtatgggtttcattgaggacgttgaagaagtcctacggaagttg
cccgcttcacgccaggtcgctctgttctcagcaaccatgccaccacagatccgccgtatc
gcacaaacctatctacaagatccgattgaagtcaccatcgcaaccaaaaccacgaccgcg
gccaacatccgccaacgttactggtgggtcagcggcctccacaagcttgatgcactcaca
cgcattcttgaggtggaaaccttcgacgcaatgattatcttcgtgcgcaccaaagctgcc
accgaagaattggccgagaaattgcaggcacgtggtctgaccgccgcagcgatcaatggc
gatatgcaacaagcgcaacgcgaacgcaccattcaccaactcaaagatggcaagctggat
atcctcgttgccaccgacgtcgccgcacgtggtttggacgtagaacgtatcagccacgtg
ctgaactacgacatcccttacgacgttgagagctacgtccaccgtatcggacgcactggg
cgtgccggtcgcagcggcgaagcaatcctctttgtgactccgcgcgaaaaaggcatgctg
cgccagattgaacgtgccactcaccaaccgatcgaagccatgcaactgcccagtgtggat
gcagtcaacgacacgcgcgtgaccaaatttttcggacgcatcagcaatgctctggtggtc
ggcgctgaaatcgacttctaccgcaaactgctgcaacgtttcgagagcgagcacaatgtc
cctgccattgagatcgctgctgccctggcacgactccttcagggggatagccccttcctg
ctgagtgtcccgacgcgcccccaacgcgagcgcagcgagctggcatccgagcatcatgtc
aaacgcccctcatccttcaagcagacagagcgtccaaacaacactgaacaccccaagcgc
ccccaacgcaacgcacctgcccgcaatgtcccagagttcggtatggagtcttaccgcatc
gaagtcggccgcatgcacggtgtgaagccagccaatatcgtcggcgctatcgccaacgaa
gctggattagagagccgctacattggccggattgacatccgtgacgatcactcggttctg
gatctccccgcagaaatgccacacgagatcctgcaacacctaaaaaaggtctgggtatca
ggacagcaactacaaatgcgtcggatcgacacaaccgaaacaaccgcacctgcacgggaa
tttaagtcaaaatcgggtggcgctggcaaattcccgccgaaaccccatcacaacaaatca
accaaaccaaaaccaccatacagcggttga
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