Xylella fastidiosa subsp. sandyi Ann-1: D934_03125
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Entry
D934_03125 CDS
T03318
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xfs
Xylella fastidiosa subsp. sandyi Ann-1
Pathway
xfs03410
Base excision repair
xfs03430
Mismatch repair
xfs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D934_03125
03430 Mismatch repair
D934_03125
03440 Homologous recombination
D934_03125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfs03400
]
D934_03125
DNA repair and recombination proteins [BR:
xfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
D934_03125
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
D934_03125
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D934_03125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIC09528
UniProt:
A0A060H1W6
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All DBs
Position
692183..693991
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AA seq
602 aa
AA seq
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MPKIIRRLSLPLAVWPDNVPPLLRRVYTARGCADPVTAQPCLAQLLSPAMLSNMQAATVL
LTEVIKAKGRILVVGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVE
ELAPLQPALLVTVDHGIACHAGIAAAKARGWKVLVTDHHLPGETLPPADVIVNPNLPGDL
FPSKTLAGVGVIFYVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVG
TVADLVPLDTNNRALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLN
AAGRLEDMALGIELLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSD
GVLPMAVCLFDPDWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIR
DVLVALDSGYPGMIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSD
GELAADELDALHARALRLGGPWGQGFPEPLFDGEFEVLQWRVLKERHLKMEVRYSGRHDA
LNAIYFNGWQGDPPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIECDVLGSQAISSGLL
DP
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaagattattcgccgtctctctttaccgctggctgtttggcctgacaatgtgccg
ccattgctgcgacgtgtgtacacggcacgtggttgtgctgatccggtgacggcgcaaccc
tgtctcgctcagttgttgtcacccgccatgctgagcaacatgcaggcagccactgtattg
ctgactgaggtcatcaaggccaaggggcgtattctggttgtcggtgattttgactgcgat
ggtgcaactgcctgtgcggttgcggtgcgtggtttgcgtttgcttggcgcgcgtaacgtg
atgcatgcggtccccaatcgtatggtgcatggttacggtttgtcgtcggcattggttgag
gagttggcaccgttgcagccagcgttgcttgttacggtggatcacggcattgcttgccat
gctggcattgctgctgctaaggcccgcggttggaaggtgttggtgactgatcaccatttg
ccgggtgaaaccttgcccccagccgatgtcattgttaatccgaatctgcctggcgatttg
tttccgagtaaaacgctggcgggtgtcggggtgatcttttatgtactgcttgcgctgcgt
gcgcgtctttatcctgctgctcgtgctgagtgcgaaggtcaagaaacgcgcattcacagt
tctatttctcagaaaaaccgtcctgatttgacgtccttactggatttagttgcggtcggg
acggttgccgacttggtgcctttagatacgaataatcgtgctttggttgctgcgggcttg
cgccggttgcgtcgtggtcaagggtgtctcggattacgcgcgttgattgaggtcagtggc
cgtgatgagtcgcaattgaccgctactgatattggttttgcattgagtccgcgtctgaac
gctgcgggacggttggaggatatggcgttgggcattgaattgttgctcactgaggattgg
actcgcgcacgtgctatcgcagccatgcttgaggagattaatgccgcacgccgtgtggta
cagcagggtatgagtgacgatgctgagcaggcagtagcgcaagcgatggcgcagtcagac
ggtgtgttgccaatggcggtgtgcctgttcgatccggactggcatccaggagtgattggt
ttggtcgcgtccaagatgaaggacaaaatgcaccgtccggtggtggctttagcaccggct
gagccgggaggtacagtgttgcgagggtcggcacggtcgatcccaggactgcatatccgc
gatgtattggtggcgctcgacagtggttatcccgggatgattcagaaatttggaggtcat
gcgatggcggccggcttgacactggatgcggaggtgttgccggtgttcgaacgtgtattt
cgtgcccaagttgagatgatggttgataagaatgtgttgcaggctgagttgtatagcgat
ggtgaattggcggccgatgagctggacgcattacatgcgcgggcattgcggctgggtggg
ccatggggacaggggtttccagagccattgtttgatggagagtttgaagtgctgcaatgg
cgtgtcctcaaggagcgtcatttgaaaatggaggtgcgttattcaggacggcatgacgct
ctgaacgctatttatttcaacggctggcagggtgatcctccagcacggcgattgcgtttg
gcatatcggttggtttgcgacgattaccgcggtggtgatgcgattcagttgatcgtggaa
tatgcggaagtgattgaatgtgatgtattgggttcccaagcaatttccagtggcctactt
gatccttag
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