Xylella fastidiosa Temecula1: PD_0033
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Entry
PD_0033 CDS
T00113
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PD_0033 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_0033 (mfd)
Enzymes [BR:
xft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PD_0033 (mfd)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PD_0033 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
SWI2_SNF2
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAO27940
UniProt:
Q87F95
LinkDB
All DBs
Position
39807..43394
Genome browser
AA seq
1195 aa
AA seq
DB search
MSPSSFPSPLLPRAGQLRAFWRAPVSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEV
DLQTLLAHCSGLPVIGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTL
MQQLAPLSYIVGGSFDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYP
MGTDVPLRIELLDEEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRE
RFDLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTAPG
VSNAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAEHAHI
DKAEVLDEQPLPVATKDVSVGQALRTFLADYAGRVLIAATSPGRREVLLELLATADLQPE
VLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHVIASQGGSLPTFAITVAPL
EDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGREPEAIIRDLGELSEGAPIVHEDHGV
GRYRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQW
SKAKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFEETPDQLAAIE
TTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFR
DRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVDE
EQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFI
TPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPEREL
ERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRA
YAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEV
GFSLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLHIPTLIPEDYLPDVHTRLTLYKR
ISTARDSNALRELNVEMIDRFGVLPETAKHLFAIAELKLQATALGISKLELGENGGRIIF
GAKPIIDPMAVIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAARGLLAALTP
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccatcctcctttccctctccgctgctgccccgtgccgggcagctccgtgcattt
tggcgtgctccggtctctccaacggcgcttgcttggcatatcgcttgtgctgctcaggca
cacaggggaccattgctgttggtcacgcatgacaatcacagtgcgcaccagattgaggtt
gacctacagactctattggcgcattgctcagggttgccggtcattggtttccctgattgg
gagacgcttccttacgaccaattcagccctgatcccaatattgtcagccagcgtttggcg
acgttgcatcggttgccttcattagcacgcggtattgtcgtcgtgccggtacagacgttg
atgcagcagttggcaccgttgagttacatcgttggtggcagctttgattttaaggtgggg
caacgcttgattctggatgctgagaagcagcggttggagcgggcgggttaccgcaatgtg
ccgcaggtgatggaccccggggattttacggtgcgcggggggctgcttgatgtttatccg
atgggtacggatgtaccgctgcgaatcgaactattggatgaggagattgattcaatccgt
acgttcgatcccgaatcgcagcgttcgttaaatcaggtcgatgtcattcatatgctgccc
ggccgcgaagtaccgttggatcctgcggtgcttgaacgcgttttggtgcggttgcgtgag
cgtttcgatctggatactcggcgcagtgcgttgtatcaggatttgaaagccgggttagct
ccctcagggatcgagtactatttgccgcttttttttgagtcggggcgtggtgggaaacac
gcgaccgcgacgctttttgattatttgagtgcagatttattggtgttaacggcaccaggt
gtctctaacgctgccgatgcgttctgggggcagacgatgcaacgttatgagcaacgtcgc
cacgatattgagcgcccgttgttaccgccgcaggagctataccagtccccggatgcgttg
cgtgaacgcttgaatcgtttgccgcgcattgaggtttggtctgccgaacatgcgcatatc
gataaagcagaagtattggatgagcagccattgccggtggcgactaaggatgtttccgtt
ggacaggcattgagaactttccttgctgattacgctggccgtgtgttgattgctgctacc
tcgcctggtcgtcgtgaggtgctgcttgaattgttggccaccgccgatctgcaaccggag
gtattgcctgactttaggtcgttttttctctctgcggccgaagtgagtgatttgggggaa
gccaatcgcgatagtggcaatggcgtgtcaggttcgaatgatgcggatgcggctgctttt
cacgtcattgcttcgcagggtgggtccttaccaacgttcgcgattactgtggctccgttg
gaggatgggttttctctcagtgtgccgcctattgcggtgcttaccgaacgtcaattgttc
cctgagcgggtgaatccggtgcgccgcagtcggcgtgttgggcgtgagcctgaggcaatt
attcgtgatctgggtgagttgtccgagggtgcccctatcgtgcacgaggaccacggggtc
ggtcgttaccgcaaactgatcaccatgaacgtcagtggtatgcctggtgagtttgtggag
atcgagtatgcaaagggggaccgtttatacgttccggttgcccaattgcatctgattagt
cgctactcaggcgcttcgccggagaccgcgccgctgcactcgttgggtggcgagcaatgg
agcaaggccaagcgcaaggcggcagaaaaggtacgcgatgtggctgcggagttgttggaa
attcaggcgcggcgtcaggcgcgtgcaggcttggctttgcgcattgatcgtacgatgtat
gaaccttttgcagcgggtttcccattcgaagagactcccgatcagcttgcagcgattgag
acgacgctgcgtgatctgcaatccagtcagccgatggaccgggtagtgtgcggtgatgtt
ggttttggcaaaacggaggtggcggtgcgtgctgcattcgctgcagccagtgcaggaaaa
caggttgcggtattggtgccgacgacgttgctagccgaacagcactatcgaaatttccgc
gatcgctttgccgattatccgattagagtcgaagtgctttcgcgcttcaaaagcactaaa
gaaatcaaggccgagttgcagaaggtcagtgaaggcaccatggatgtcattgtcggcacg
catcggttgttgcaaccggacgtcaagtttaaagacttgggtttagtcattgtcgacgag
gagcagcgtttcggggtgcgtcagaaggaggcgctgaagtcgttacgtgcgaatgtacat
ttgttgacgctgacagctacgcccatcccgcgcacgctcaatatggcaatggcggggttg
cgtgatttgtcgatcattgcgacaccaccgctgaatcggctggcggtgcagacgtttatc
actccttgggataatgcgctgttgcatgaggctttccagcgtgaactagcgcgtggtggt
cagttgtactttctacataacgatgtggagagtatcggcaggatgcagcgtgatctggcc
caactggtgccggaagcgcgtattggtattgcccacggccagatgcccgaacgcgagtta
gagcgcgtcatgctggatttccagaagcagcacttcaacgtgttgttgtctacgacgatt
atcgaatccggtattgatattcccaacgctaacaccatcatcatcaaccgcgctgaccgc
tttggtttggcgcagttgcaccagttgcgtggccgtgtcggtcgttctcaccatcgcgcc
tatgcttatttggtggttcctgaccggcgcagcatgacggcggatgcagagaaacgcttg
gaggcgattgcgtcaatggacgagttgggtgcgggctttactttggcgacccatgatctg
gaaatacgtggcgctggtgagttgctcggtgaagatcaaagcgggcagatggccgaggtc
ggtttcagcttatataccgagttgcttgagcgcgcggtgcgcagcatcaagcaaggtaaa
ttgccagaccttgatgcaggtcaggaagaacgtggcgcggaggtggatttgcacataccc
acgttgatcccagaggattatttgcccgatgtgcatacccgtttgacactctacaaacgg
atttccacggcccgtgacagcaatgcgctgcgtgagttgaatgtggaaatgattgaccgc
tttggtgtgcttccagagactgctaaacatctttttgcaatcgctgagttgaagttgcaa
gccactgcattgggtatttccaagttggaattgggggaaaatggtggccgtatcatattt
ggagccaaacccatcattgatcctatggctgtgatccagctcgtccaaaagcaatccaaa
ctgtattcgatggaggggccaagtaaattaaaactcaagttgcctttgccggaaccggcc
gatcgtttcaacgctgcacgagggttgcttgctgcgttgacaccttaa
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