Xylella fastidiosa Temecula1: PD_0165
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Entry
PD_0165 CDS
T00113
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03030
DNA replication
xft03430
Mismatch repair
xft03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PD_0165 (dnaE)
03430 Mismatch repair
PD_0165 (dnaE)
03440 Homologous recombination
PD_0165 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xft03032
]
PD_0165 (dnaE)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_0165 (dnaE)
Enzymes [BR:
xft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PD_0165 (dnaE)
DNA replication proteins [BR:
xft03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PD_0165 (dnaE)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PD_0165 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAO28059
UniProt:
Q87EY0
LinkDB
All DBs
Position
complement(209003..212584)
Genome browser
AA seq
1193 aa
AA seq
DB search
MSTSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNN
LFALIKFYKAAETVGIKPISGADLLIAEPEHPPWGMTLLCRDHAGYLNLSQLISRGWLEG
HRPEGGVAVHPDWVRDHHKNLFALIGRHSLAGQLLAKGRADLAEQQLADWQHVFGDGLHL
ELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEARVCIASGRMLDDP
KRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPNDET
LDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLIVADFIQW
GKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMER
RDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLIPSTLGIT
LKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVIAPNPLT
EFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRHARA
CIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQIVGGYSLGSA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVLRPNINHSAYMFEA
THADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRVTSAKLNRRALEAMIHA
GALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNADPGTPVIQLDLPECEEWP
LTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILGSQQRGNGEKRTWQP
EVNTILAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHLLTRDRILIVKGGL
REDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLRVDLRTSHAWERIDAILARYRPGNTPLR
LDLLLNSTHGPVAGTLDLSGGQSVRIEQSLLDKLQKDPAVSKLKVKYTPPWVQ
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgtcttcatttgttcatctccatattcacactgaattctcgttagcggattca
acgattcgcgtgcccgagaaaccagaacaggctcacccgaaaaaggccaaacaagccaac
ctactcagcagagccgttgaactcggactgccagcgctggcagtaacggatctgaacaac
ctattcgcactgattaagttctataaggccgctgaaaccgtcggcattaagccgatcagc
ggtgctgatctcctcatcgccgaaccagagcaccccccgtggggaatgacattgctgtgt
cgggatcacgctggctacctgaatctatcgcaactgatcagccgcggttggctggaaggt
caccgccctgaaggaggagtggccgtgcacccggactgggtccgtgaccaccacaaaaat
ctatttgccctaatcggacgtcacagcctggccggacagctgttggccaaaggtcgcgct
gatttggccgaacagcaactggcggactggcaacacgtattcggtgacggcttgcacttg
gaactcacgcgcactggacgcgatggcgaagaaccattcaatcaatttgccctccaagtc
gctggcatccgcggcataccggtgattgccagcaacgacgttcgcttcctggtacaaagc
gactttctggcacacgaggcgcgcgtctgtatcgcatctggacgcatgcttgatgatccc
aagcgaccacgcacttacagcgaacaacagtatctgcgttcctccgaagagatggcagca
ctctttgctgacatcccagacgccttggacaacacccgcaccttggcacaacgctgcaat
atcgagatgcggctggggacctatttcttacctaactaccccgttcccaacgacgaaacg
ttggacagttggatccgcaaacagtcgcatgaaggtctggaagcacgcctactgaaacat
ccattagcaccagggcagacacgtgaagactacgtgacccgtctggaatttgaactggac
accatcatcaagatggggttctccggttacttcctcatcgtggccgacttcattcaatgg
ggtaaacaacagggcatccccatcggcccgggacgcgggtctggtgccggctcactggtc
gcgtgggcgttactgattactgacctggaccctctgccatacaacttgttgtttgaacgc
tttcttaatcccgaacgcgtatcaatgccggatttcgacatcgacttttgtatggaacgc
cgtgatgaggtcattagctacgtcgcacgcaaatacggtcgcgaacgggtcagtcaaatc
attacctacggcaccatggctgcgaaagcagtggtgcgcgacgtcggtcgcgtattgggt
ttcccatatggcttggtcgacagcgtcgctaagctgatcccgagcacccttggcatcacc
ctgaaagatgcgatgggcgaaggcgagaccaacgacaacgcctcagcagaactgatacaa
cgctatcaagccgaggaggacgtacaggagctgctcaacctggcacgccaactggaagat
ctgacccgcaatgctggcaagcacgctggcggtgtcgtgatcgcaccgaacccactcact
gaattctgcccactctttgcagaacacgacgaaaacggacgcgggaagaaccccgtcacc
caattcgacaaaaacgacgtggaagaagtcggcttagtgaaattcgacttcctcggccta
cgcacactcaccatcattgattgggcggtcaaggcaatcaacaaacgccacgcccgcgcc
tgtattgatccggtggacatcaccgcacttccactggacgacatcccaacttacaaagac
gtttttgcatcagggaacacgagcgcagtattccaatttgaatcctcgggcatgcgccgc
ctcctcaaagatgcacgcccagaccgcttcgaagatctcatcgcactggtgtcactgtat
cgcccaggccctatggacttgatccctgaattcaccgcgcgcaagcacggagtgcaagag
accatctatcccgacccgcgtacgaagaacattcttaaagacacctacgggatcatggtg
taccaggaacaagtgatgcaaatggcccagattgtcggcggttactcgctgggcagcgct
gacctgctacgtcgcgcgatgggtaaaaaagtacctgccgagatggccaagcaccgcgag
atcttccgcgagggtgccgccaaaggtggcatggacgcggtcaaagccgatgaaatcttc
gacctcatggagaaatttgccggctatggttttaataaatcccacgccgctgcatacgcg
ctggtcagttatcaaaccgcttggctcaagcgccattatcctgctgaattcatggcagcc
acgctgtcctcggacatggacaacaccgacaaagtcgtcggcttcctcgacgaggcacgt
aacctcaatctgaaggtgctgcgaccaaacatcaatcactcagcctacatgttcgaggca
actcacgccgacacaatccaatacggcctgggcgctattaaaggtgtcggccaaagcgtc
tgcgaggcaatcgtcaaagaaaggttgcactacggtccgtatacgtcactgctcgatttc
tgtacccgggtcacctcagccaaactcaaccgacgtgcactcgaagcaatgatccatgct
ggcgcactggacgagctaggtaaaaatcgcgcctctgtcatgctgcaactgccagaagtc
atcaaagcaacggaacaaatgtccagagaacgcgagtccgggcaaaactcgcttttcggc
aacgcagaccccggcacaccagtcatccaattagatcttccagaatgcgaagaatggccg
ctaacacgcatgttgaacggagagcgggagacgctgggcctttatttcagcggccaccca
ttcgacccataccgtaagcaagtgaaggaacttgttggttgcgatctaaacaccagtgcg
cttgaaagaattctgggttcccaacaacgtggcaacggtgaaaagcgtacttggcagcca
gaggtgaacaccattctcgcaggattggtcgtcagtgtgcgccgtaagggagacagccaa
gtctttgtacaacttgaagacggacgcggtcgaattgaatgcagtgcgttctccgacgcc
ctggcagagttcggccacctgttgacccgtgaccgcatactgattgtcaaaggtggtctg
cgagaagatgaattcaacggcggctacagcctacggatccgtcaatgctgggattacgcg
caactctgtacagactatgcgcaacgcttgttgctacgcgtggacctacgcacctctcac
gcatgggaaagaatcgatgccatcctggcacgctatcgccccggcaacaccccattacgt
ctcgatctgttgctgaattcaacccacggccccgtcgccggcacgctcgacttgagtggc
ggccaatctgtacgtatcgaacaatcactcttggataaactgcaaaaagatcccgcggta
tctaagcttaaggtcaaatacacgccaccttgggtgcaatga
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