Xylella fastidiosa Temecula1: PD_0196
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Entry
PD_0196 CDS
T00113
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
xft
Xylella fastidiosa Temecula1
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xft03016
]
PD_0196 (truB)
Enzymes [BR:
xft01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PD_0196 (truB)
Transfer RNA biogenesis [BR:
xft03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PD_0196 (truB)
Prokaryotic type
PD_0196 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AAO28087
UniProt:
Q87EV2
LinkDB
All DBs
Position
247597..248505
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AA seq
302 aa
AA seq
DB search
MLMSRISYRRLDGILLLDKPAGISSNSALQVARRLLRAKKGGHTGSLDPLATGLLPLCFG
EATKIAGLLLDSTKAYDADVLLGTTTTTDDAEGAVLLTRPVPTLDAEMVDALIPQLIGRI
RQRAPIYSALKQGGEPLYAKARRGEVVNAPVREVEVHAIELLFLATPRLQLRVTCGSGTY
IRSLVRDLGEILGCGAHINALRRRWVAPFQIPKMLTLDALEQALSAGRDPDSLLLPLVEG
LAGFPALELDAQRLACFRLGQRLRDHSFQTGRVAVFSRDGIPAGLGEVDSEGLLVPQRLF
NL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
ttgcttatgtctcgcatttcctatcgtcgtttggatggtattttgctgcttgataagcca
gctggcataagttctaacagtgcgttacaggtcgcgcgtcggttattgcgtgctaaaaag
ggggggcatactggtagcttggatccactcgctactggattgttgccgctgtgttttgga
gaagccaccaaaatcgctggtttgctactggattctaccaaggcatacgacgctgacgtg
ctactcggcaccacgacgacgacggatgatgctgaaggggctgtattacttacgcgccct
gtgccgacgttagatgccgaaatggttgatgctcttatacctcaattgattggtcggatt
aggcaacgtgccccaatctattctgctctcaaacaggggggtgaacctttatatgctaaa
gctcggcgtggtgaagtggtcaatgccccggtacgtgaggttgaggtgcatgcgatcgaa
ttgctttttttggctacgccgcgattacaattacgtgtgacttgcggttcgggtacatat
attcgtagcctagttcgtgatttgggcgaaatcttgggctgcggcgcacatatcaatgca
ttgcgccgtcgttgggtcgctccatttcagataccgaagatgttgacgttggatgcattg
gagcaggcattgagtgcagggagagatcctgattctctgttattgccattggttgaagga
ttagccggtttcccagcgctggaacttgatgcccagcgtctagcttgcttcaggctaggg
cagcgcttgcgcgatcatagttttcagactgggcgggttgcggtgttcagtcgagatggt
atccctgcggggctgggggaggtggatagtgaaggcttgttggtgccgcagcgtcttttc
aatctttga
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