Xylella fastidiosa Temecula1: PD_0205
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Entry
PD_0205 CDS
T00113
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PD_0205 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xft03019
]
PD_0205 (deaD)
03009 Ribosome biogenesis [BR:
xft03009
]
PD_0205 (deaD)
Enzymes [BR:
xft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PD_0205 (deaD)
Messenger RNA biogenesis [BR:
xft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PD_0205 (deaD)
Ribosome biogenesis [BR:
xft03009
]
Prokaryotic type
rRNA helicases
PD_0205 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
AAA_19
CMS1
Cas3-like_C_2
AAA_22
P-loop_SecA
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AAO28096
UniProt:
Q87EU3
LinkDB
All DBs
Position
complement(261295..263142)
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AA seq
615 aa
AA seq
DB search
MLSGVLMSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQ
TGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYG
GQSYGQQLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVE
EVLRKLPASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLH
KLDALTRILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQL
KDGKLDILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTP
REKGMLRQIERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRF
ESEHNVPAIEIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNN
TEHPKRPQRNAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIR
DDHSVLDLPAEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKPGGAGKFPPK
PHHNKSTKPKPPYSG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
gtgctctccggagttctcatgtcaaatccatcttctacaccgctgctgtttgcagatctc
ggcctctccgatgctgtgatgcaagccgtcacaaaaatcggctacgaaactccgtcgccc
atccaggcggcgaccatcccagccttgcttgctgggcgcgatgtgctgggccaagcccag
accggcactgggaagactgccgcattcgcgctaccgttgctcacacgcaccgttctgaac
caggtcaagccgcaagtgctcgtactggcacccacccgcgaactggctatccaagttgcc
gaagcattccagcgctatgctgcctcgatctctggcttccgtgtcctacccgtgtacggc
ggccaatcctatggccaacaactggccgcactgaaacgcggtgtccatgtgatcgtcggt
accccgggccgggtgattgatcacctagagcgcggcaccctggatctatcggaattaaaa
acgctggtcctcgacgaagccgacgaaatgctgcgtatgggtttcattgaggacgttgaa
gaagtcctacggaagttgcccgcttcacgccaggtcgctctgttctcggcaaccatgcca
ccacagatccgccgtatcgcacaaacctatctacaagatccgattgaagtcaccatcgcc
accaaaaccacgaccgcagccaacatccgccaacgttactggtgggtcagcggcctccac
aagctagatgcactcacacgcattcttgaggtggaaaccttcgacgcaatgattatcttc
gtgcgcaccaaagctgccaccgaagaattggccgagaaattgcaggcacgtggcctgacc
gccgcagcgatcaatggcgatatgcaacaagcgcaacgcgaacgcaccattcaccaactc
aaagatggcaagctggatatcctcgttgccaccgacgtcgccgcacgtggtttggacgta
gaacgtatcagccacgtgctgaactacgacatcccttacgacgttgagagctacgtccac
cgtatcggacgcactgggcgtgccggtcgcagcggcgaagcaatcctctttgtgactccg
cgcgaaaaaggcatgctgcgccagattgaacgtgccactcaccaaccgatcgaagccatg
caactgcccagtgtggatgcagtcaacgacacgcgcgtgaccaaatttttcggacgcatc
agcaatgctctggtggtcggcgctgaaatcgacttctaccgcaaactgctacaacgtttc
gagagcgagcacaatgtccctgccattgagatcgctgctgccctggcacgactccttcag
ggggatagccccttcctgctgagtgtcccgacgcgcccccaacgcgagcgcagcgagctg
gcatccgagcatcatgtcaaacgcccctcatccttcaagcagacagagcgtccaaacaac
actgaacaccccaagcgcccccaacggaacgcacctgcccgcaatgtcccagagttcggt
atggagtcttaccgcatcgaagtcggccgcatgcacggtgtgaagccagccaatatcgtc
ggcgctatcgccaacgaagctggattagagagccgctacattggccggattgacatccgt
gacgatcactcggttctggatctccccgcagaaatgccacacgagatcctgcaacaccta
aaaaaggtctgggtatcaggacagcaactacaaatgcgtcggatcgacacaaccgaaaca
accgcacctgcacgggaatttaagtcaaaaccgggtggcgctggcaaattcccgccgaaa
ccgcatcacaacaaatcaaccaaaccaaaaccaccatacagcggttga
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