Xylella fastidiosa Temecula1: PD_0208
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Entry
PD_0208 CDS
T00113
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft00521
Streptomycin biosynthesis
xft00523
Polyketide sugar unit biosynthesis
xft00525
Acarbose and validamycin biosynthesis
xft00541
Biosynthesis of various nucleotide sugars
xft01100
Metabolic pathways
xft01110
Biosynthesis of secondary metabolites
xft01250
Biosynthesis of nucleotide sugars
Module
xft_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PD_0208 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
PD_0208 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
PD_0208 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
PD_0208 (rfbB)
00525 Acarbose and validamycin biosynthesis
PD_0208 (rfbB)
Enzymes [BR:
xft01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
PD_0208 (rfbB)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
AAO28099
UniProt:
Q87EU0
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All DBs
Position
265352..266413
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AA seq
353 aa
AA seq
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MGLATWLVTGGAGFIGGNFVLQAISLGHRVINLDALTYAGHLETLAALDGCAEHLFVHGD
IGDRALVSRLLDTHRPDAVLNFAAESHVDRSIDAPAAFIQTNVVGTLLLLEAVCGYWKAL
PEAARAAFRFLHVSTDEVYGSLGETGAFTERTAYAPNSPYSASKAASDHLVRAFHHTYGL
PVLTTHCSNNYGPYHFPEKLIPLVITKALAGEPLPVYGDGRHVRDWLFVGDHCTALCAVL
AGGRVGETYNIGGQAERENLEVVRMICRLLDERRPRADGLSYQSQIVHVADRPGHDRRYA
IDTSKLVSELGWAPVYRFEQGLALTVDWYLQHQDWVRAVLQGRDRVEGLLTAV
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgggattggcaacgtggctcgtgaccggtggtgccggtttcatcggcggtaattttgta
ttgcaagcgattagcctcgggcatcgtgtgattaatcttgatgctctgacgtatgcgggt
catttggagacgctcgctgcgcttgatgggtgcgcggagcatctttttgttcatggtgat
attggcgaccgtgcgttggtgagccgtttgctggatacgcatcgcccggatgcagtgctg
aattttgctgctgagagtcacgttgatcgttcgattgatgctcccgctgcgttcattcag
accaatgtggttggcacgttgctgttgttggaggcggtgtgtgggtactggaaggcgttg
ccggaggcggcgcgtgctgcgttccgttttctgcatgtatccacagatgaggtttacggc
agtttgggggagacgggcgcatttacagagaggacggcgtatgcacctaattcgccttat
tcggcgtcaaaggccgcgtctgatcatttggtccgtgcgtttcaccatacgtacggattg
ccggtgctgaccacgcattgttcaaataactatgggccatatcattttccggagaagctg
attccgctggtcatcaccaaggcgttggcgggtgagccgttacctgtgtatggcgatggg
cggcacgtgcgtgattggctgtttgtcggcgatcactgtaccgcgctgtgtgctgtattg
gctggagggcgggtgggtgaaacgtacaatatcggggggcaggccgagcgtgagaatctt
gaagtggtccgcatgatttgccgtttgcttgacgagcgccgcccgcgtgccgatgggctg
agttatcaaagccagattgttcatgttgcagatcgtccggggcatgatcgccgttatgcg
atcgacacgtccaagttggtgagtgagttaggctgggcgccggtgtatcgctttgagcag
ggacttgcgctgactgtggattggtatttgcagcatcaggattgggtacgtgcggtgctc
caagggcgtgaccgcgttgagggcctactgactgcggtgtaa
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